Browse Element(s) Details


OsAffx.2258.1.S1_at

Description tigr:9629.m04472
TID=OsAffx.2258.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4669011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46640OsAffx.11492.1.S1_at11/111+26886103..26886951hypothetical protein
LOC_Os01g46650OsAffx.23690.1.S1_at10/111+26892208..26894097hypothetical protein
LOC_Os01g46660OsAffx.12611.1.S1_at1/111+26895037..26900663transposon protein, putative, Mutator sub-class
LOC_Os01g46670OsAffx.23691.1.S1_at10/111+26903393..26904848hypothetical protein
LOC_Os01g46680OsAffx.23692.1.S1_at11/111+26908099..26908314hypothetical protein
LOC_Os01g46690OsAffx.2258.1.S1_at11/111+26910144..26912751hypothetical protein
LOC_Os01g46700Os.25567.1.S1_at7/111+26919071..26926245SET domain containing protein, expressed
LOC_Os01g46710Os.5417.3.S1_x_at11/111+26928835..26935324transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46710Os.5417.2.S1_x_at11/111+26928835..26935324transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2258.1.S1_at--24--2971Chr01:26911569..26911593 (25 bp)
AATGGCAACTCTTGCGTGGCTATCG
LOC_Os01g46690
OsAffx.2258.1.S1_at--587--8491Chr01:26911649..26911673 (25 bp)
TGGCTATCTATTCTGCTGGGCTTAT
LOC_Os01g46690
OsAffx.2258.1.S1_at--362--1111Chr01:26911723..26911825 (25 bp)
AGTGATGCGGTATGCCACACCACAA
LOC_Os01g46690
OsAffx.2258.1.S1_at--291--9091Chr01:26911838..26911862 (25 bp)
TGCTCATCGTCATTCTATTGCTGGA
LOC_Os01g46690
OsAffx.2258.1.S1_at--1161--6351Chr01:26912414..26912438 (25 bp)
GATGCCAAGGTTCCTCGAATCAGAA
LOC_Os01g46690
OsAffx.2258.1.S1_at--1019--2811Chr01:26912447..26912471 (25 bp)
AAGTTGGTTGTCTACATACGCTCCT
LOC_Os01g46690
OsAffx.2258.1.S1_at--765--3611Chr01:26912470..26912494 (25 bp)
CTTGGAGGCTGGTTTCACGCTGTAT
LOC_Os01g46690
OsAffx.2258.1.S1_at--263--911Chr01:26912500..26912524 (25 bp)
AGGCTGCTGCATCTATCGTTATGAC
LOC_Os01g46690
OsAffx.2258.1.S1_at--374--6491Chr01:26912634..26912658 (25 bp)
GATAGCTAACATTACCTCCGTGATT
LOC_Os01g46690
OsAffx.2258.1.S1_at--255--6891Chr01:26912666..26912690 (25 bp)
GTATAGCTTCTTACATCTCCATCTT
LOC_Os01g46690
OsAffx.2258.1.S1_at--204--4071Chr01:26912691..26912715 (25 bp)
CGAGGCGCTCAAACCAGTTCTGGGA
LOC_Os01g46690
Target Sequence 
AATGGCAACTCTTGCGTGGCTATCGTTTTCCCTATGCCAACTACATGGAGCCAATGGAAAAATTGTTGGTGCTCCAGCTG
TGGCTATCTATTCTGCTGGGCTTATCATCTATGGCACATCACTAGTTTTCAAGTGGAGCCCGAGTGGTGTTATGAGTGAT
GCGGTATGCCACACCACAATGTTATCGATGTTGCTCATCGTCATTCTATTGCTGGATGTGGGAGTTTTTGGACATCTCAA
GAGAGAACATAAAATTGCAAATACCATATCTGCATTGGCCACCCTGACACAGGTGGCATCTTCGCTGCTCCCACATGGTG
ACCTGTGCAAGGGATGCATTTGTCAAGATCAGGCACCTGATGCCAAGGTTCCTCGAATCAGAAACAGGAGGAAGTTGGTT
GTCTACATACGCTCCTTGGAGGCTGGTTTCACGCTGTATTGGGCAGGCTGCTGCATCTATCGTTATGACCACACGTATTT
CAGGATAGCTAACATTACCTCCGTGATTCTATCATGTATAGCTTCTTACATCTCCATCTTCGAGGCGCTCAAACCAGTTC
TGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis