Browse Element(s) Details


OsAffx.11492.1.S1_at

Description tigr:9629.m04467
TID=OsAffx.11492.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4664011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46610Os.12610.1.S1_at11/111+26859919..26863985Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g46620OsAffx.23689.1.S1_at8/111+26867268..26867621hypothetical protein
LOC_Os01g46626NANA1+26872629..26876928retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g46632Os.45173.1.S1_x_at1/111+26879163..26882391retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g46640OsAffx.11492.1.S1_at11/111+26886103..26886951hypothetical protein
LOC_Os01g46650OsAffx.23690.1.S1_at10/111+26892208..26894097hypothetical protein
LOC_Os01g46660OsAffx.12611.1.S1_at1/111+26895037..26900663transposon protein, putative, Mutator sub-class
LOC_Os01g46670OsAffx.23691.1.S1_at10/111+26903393..26904848hypothetical protein
LOC_Os01g46680OsAffx.23692.1.S1_at11/111+26908099..26908314hypothetical protein
LOC_Os01g46690OsAffx.2258.1.S1_at11/111+26910144..26912751hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11492.1.S1_at--496--7631Chr01:26886408..26886432 (25 bp)
GGGACTGCGACAGCGAGGACCACCT
LOC_Os01g46640
OsAffx.11492.1.S1_at--35--10211Chr01:26886435..26886459 (25 bp)
TATTCTTCAACTTTCGCTCGTAAAC
LOC_Os01g46640
OsAffx.11492.1.S1_at--975--991Chr01:26886477..26886501 (25 bp)
AGGATCCACCTCTGCATGGTTGGAT
LOC_Os01g46640
OsAffx.11492.1.S1_at--860--9051Chr01:26886577..26886601 (25 bp)
TGCTTGGTTTGGCACCGCTTTGCAC
LOC_Os01g46640
OsAffx.11492.1.S1_at--725--10271Chr01:26886595..26886619 (25 bp)
TTTGCACCTCCCTTTATGATGACAA
LOC_Os01g46640
OsAffx.11492.1.S1_at--729--8831Chr01:26886611..26886635 (25 bp)
TGATGACAACGCCTAAGTTTGCCGG
LOC_Os01g46640
OsAffx.11492.1.S1_at--1087--2091Chr01:26886665..26886689 (25 bp)
ACATCCGGGTGTGGCGTGACATCAA
LOC_Os01g46640
OsAffx.11492.1.S1_at--920--371Chr01:26886685..26886709 (25 bp)
ATCAACCTTGTAGCTATCGACACTC
LOC_Os01g46640
OsAffx.11492.1.S1_at--611--1011Chr01:26886762..26886786 (25 bp)
AGGTTGTCGAGCTTCTACTCTTGGC
LOC_Os01g46640
OsAffx.11492.1.S1_at--530--5031Chr01:26886851..26886875 (25 bp)
GCAGCAATGACAGCGGAAGGCCGAT
LOC_Os01g46640
OsAffx.11492.1.S1_at--566--771Chr01:26886874..26886898 (25 bp)
ATGTCGCGGTGTTCGAGGTCTCCTA
LOC_Os01g46640
Target Sequence 
GGGACTGCGACAGCGAGGACCACCTCATATTCTTCAACTTTCGCTCGTAAACACCCGAGGATCCCTGCCAGGATCCACCT
CTGCATGGTTGGATCCCACCACGCCGAGTCCAAGCCCTCCTGGGGTGGGGCAGCACAAGAGAGAAGAGGGATCTAGTGGT
GGCAAGGGGTGCTTGGTTTGGCACCGCTTTGCACCTCCCTTTATGATGACAACGCCTAAGTTTGCCGGCGACCTCCATGA
CGGGGCTCTACCCGGTGACATCCGGGTGTGGCGTGACATCAACCTTGTAGCTATCGACACTCCTCCTCCCCGATGGCCGG
TGGCTCCTCGAGCTCCACCCGACGGTGAGCACCCAGGTTGTCGAGCTTCTACTCTTGGCCTCCTGTTGTTGCTTTGCCGC
TACCTCCTCTCCCCTCTCCCCGATGCGACGACGAGCATCAACGGCAGCAATGACAGCGGAAGGCCGATGTCGCGGTGTTC
GAGGTCTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis