Browse Element(s) Details


OsAffx.23689.1.S1_at

Description gb:NM_192425.1
DB_XREF= gi:34911933
GEN=OSJNBb0006H05.30
TID=OsAffx.23689.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0006H05.30 (OSJNBb0006H05.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g466208/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46570Os.38060.2.S1_x_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46570Os.38060.1.S1_a_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46570Os.57322.1.S1_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46590Os.26738.1.S1_at10/111+26849631..26854149peptidase M50 family protein, putative, expressed
LOC_Os01g46580Os.22471.2.S1_x_at11/111+26853580..26858468expressed protein
LOC_Os01g46580Os.22471.2.S1_at11/111+26853580..26858468expressed protein
LOC_Os01g46600Os.46021.1.S1_at8/111+26858869..26859332seed maturation protein PM41, putative, expressed
LOC_Os01g46610Os.12610.1.S1_at11/111+26859919..26863985Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g46620OsAffx.23689.1.S1_at8/111+26867268..26867621hypothetical protein
LOC_Os01g46626NANA1+26872629..26876928retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g46632Os.45173.1.S1_x_at1/111+26879163..26882391retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g46640OsAffx.11492.1.S1_at11/111+26886103..26886951hypothetical protein
LOC_Os01g46650OsAffx.23690.1.S1_at10/111+26892208..26894097hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23689.1.S1_at--350--4891Chr01:26868055..26868079 (25 bp)
GCTTTCGTGACAAGATGCGCGAGAT
NONE
OsAffx.23689.1.S1_at--884--9711Chr01:26868025..26868049 (25 bp)
TCAACGCCTGCGATATCGCAACGAT
NONE
OsAffx.23689.1.S1_at--207--9991NONE
TATCGCAACGATCTTCTACACAGTT
NONE
OsAffx.23689.1.S1_at--29--7811Chr01:26867584..26867608 (25 bp)
GGTCGTCCTTGCTGCGCGTCTCGTA
LOC_Os01g46620
OsAffx.23689.1.S1_at--1060--9971Chr01:26867561..26867585 (25 bp)
TACCATGGCATGGTCCTGGCCTGGG
LOC_Os01g46620
OsAffx.23689.1.S1_at--611--4971Chr01:26867536..26867560 (25 bp)
GCATCGTGCCCTCGTTCTGCATCGA
LOC_Os01g46620
OsAffx.23689.1.S1_at--738--4171Chr01:26867481..26867505 (25 bp)
CGCCAGTAACGTGGCCGCGGTGTAT
LOC_Os01g46620
OsAffx.23689.1.S1_at--285--8611Chr01:26867407..26867431 (25 bp)
TGGTGCGGACCGAGCAACACGTGAC
LOC_Os01g46620
OsAffx.23689.1.S1_at--761--6491Chr01:26867338..26867362 (25 bp)
GATATCTGAAGTGCAAGACCCCGTT
LOC_Os01g46620
OsAffx.23689.1.S1_at--1057--1331Chr01:26867323..26867347 (25 bp)
AGACCCCGTTCTTCGAGGGAGAGCA
LOC_Os01g46620
OsAffx.23689.1.S1_at--1--2231Chr01:26867299..26867323 (25 bp)
ACAAGAGTGTTGTGTATTCATGTGG
LOC_Os01g46620
Target Sequence 
GCTTTCGTGACAAGATGCGCGAGATCCGCCTCAACGCCTGCGATATCGCAACGATCTTCTACACAGTTGAGGGGCTTGAC
CCCGGCGCCTCCTCGCCGCCGGGCCACGGAGCACCGCCACCAGCGTTCCACCTCGCCGTCGACGTGAGCGGGGTCCGCGA
GGGGTACACGGCCTGCGTCGGGGGCATGCACGGCTGGCGGTCGTCCTTGCTGCGCGTCTCGTACCATGGCATGGTCCTGG
CCTGGGGCATCGTGCCCTCGTTCTGCATCGACGGCCAGCGGCTGCGACCGGGCGGCGGCGCCGCCAGTAACGTGGCCGCG
GTGTATGCCGTAGCGGCAGAGAGCGCGGTGCTACGTGAGGAGGAGCTGCACGGTATGGTGCGGACCGAGCAACACGTGAC
GGGGAAGGTGGATTTCGACGTGGAGGGTCATGTGGCGGGGCTCGGATATCTGAAGTGCAAGACCCCGTTCTTCGAGGGAG
AGCACAAGAGTGTTGTGTATTCATGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis