Browse Element(s) Details


Os.22471.2.S1_at

Description gb:NM_192422.1
DB_XREF= gi:34911927
GEN=OSJNBb0006H05.27
TID=Os.22471.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22471 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0006H05.27 (OSJNBb0006H05.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0006H05.27 (OSJNBb0006H05.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4658011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46554Os.47463.1.S1_x_at6/111+26827841..26833027transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46554Os.14491.2.S1_x_at5/111+26827841..26833027transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g46570Os.38060.2.S1_x_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46570Os.38060.1.S1_a_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46570Os.57322.1.S1_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46590Os.26738.1.S1_at10/111+26849631..26854149peptidase M50 family protein, putative, expressed
LOC_Os01g46580Os.22471.2.S1_x_at11/111+26853580..26858468expressed protein
LOC_Os01g46580Os.22471.2.S1_at11/111+26853580..26858468expressed protein
LOC_Os01g46600Os.46021.1.S1_at8/111+26858869..26859332seed maturation protein PM41, putative, expressed
LOC_Os01g46610Os.12610.1.S1_at11/111+26859919..26863985Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g46620OsAffx.23689.1.S1_at8/111+26867268..26867621hypothetical protein
LOC_Os01g46626NANA1+26872629..26876928retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g46632Os.45173.1.S1_x_at1/111+26879163..26882391retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007015biological_processactin filament organization
GO:0005885cellular_componentArp2/3 protein complex
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22471.2.S1_at--996--9531Chr01:26856226..26856250 (25 bp)
TCTAGCTTCAAAGACGGTGGCTCCT
LOC_Os01g46580
Os.22471.2.S1_at--1099--4891Chr01:26856230..26856254 (25 bp)
GCTTCAAAGACGGTGGCTCCTAATG
LOC_Os01g46580
Os.22471.2.S1_at--604--2751Chr01:26856236..26856260 (25 bp)
AAGACGGTGGCTCCTAATGTTGACA
LOC_Os01g46580
Os.22471.2.S1_at--779--5751Chr01:26856238..26856262 (25 bp)
GACGGTGGCTCCTAATGTTGACAAG
LOC_Os01g46580
Os.22471.2.S1_at--380--7731Chr01:26856241..26856265 (25 bp)
GGTGGCTCCTAATGTTGACAAGCTT
LOC_Os01g46580
Os.22471.2.S1_at--9--3571Chr01:26858374..26858398 (25 bp)
CTTTCAAAAGGCTGGTTTGTGCAAA
LOC_Os01g46580
Os.22471.2.S1_at--219--8351Chr01:26858383..26858407 (25 bp)
GGCTGGTTTGTGCAAATACCTTGAA
LOC_Os01g46580
Os.22471.2.S1_at--1048--3291Chr01:26858395..26858419 (25 bp)
CAAATACCTTGAATTCGTGCTTAAA
LOC_Os01g46580
Os.22471.2.S1_at--767--9911Chr01:26858399..26858423 (25 bp)
TACCTTGAATTCGTGCTTAAACCCA
LOC_Os01g46580
Os.22471.2.S1_at--1010--5191Chr01:26858405..26858429 (25 bp)
GAATTCGTGCTTAAACCCATCTTTT
LOC_Os01g46580
Os.22471.2.S1_at--161--10631Chr01:26858408..26858432 (25 bp)
TTCGTGCTTAAACCCATCTTTTCTT
LOC_Os01g46580
Target Sequence 
TCTAGCTTCAAAGACGGTGGCTCCTAATGTTGACAAGCTTGTTGCTCTTGTTCACCGTCCTAATGAATCCTTTTTCGTTG
CTCCCCAGGCAGACAAAGTTACAGTAGTATACCCTATGAGGTTCCAGGATTCCATTGATATAGTTTTAGCAACTTCCTTT
CTGCAGGAATTTGTGGAAGCAAGGCGGACTAGCGCTCTTAACAACGCCCCTTCCTGCTTGTGGTCTCCAGTACCACCTCT
TGAGTTAAAAGGAGTACCTTCTGATGCACTAAATGCAAATGCCGGTTTTGTTACTTTTGTTGTTTTCCCGCGGCATGTTG
AGGGTAAAAAATTGGACAAAACAGTTTGGAGTTTGTTGACTTTTCATGCTTATGTAAGCTACCATGTGAAGTGTTCTGAA
GGATTCATGCACACCAGGATGAGACGTAGAGTTGAGACGCTGATCCAGGCTTTGGATCGTGCAAAATCTGATGCAGAGAA
GTTGAAGAAGTTGGTGAATGGTGGATCTTTCAAAAGGCTGGTTTGTGCAAATACCTTGAATTCGTGCTTAAACCCATCTT
TTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22471.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis