Browse Element(s) Details


Os.12610.1.S1_at

Description gb:AF155333.2
DB_XREF= gi:5148935
TID=Os.12610.1
CNT=96
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.12610 (NCBI UniGene Cluster)
DEF=Oryza sativa NADP-specific isocitrate dehydrogenase mRNA, complete cds.
PROD=NADP-specific isocitrate dehydrogenase
FL= gb:AF155333.2 gb:AK061752.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4661011/11Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46570Os.38060.2.S1_x_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46570Os.38060.1.S1_a_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46570Os.57322.1.S1_at11/111+26841391..26848609CTP synthase, putative, expressed
LOC_Os01g46590Os.26738.1.S1_at10/111+26849631..26854149peptidase M50 family protein, putative, expressed
LOC_Os01g46580Os.22471.2.S1_x_at11/111+26853580..26858468expressed protein
LOC_Os01g46580Os.22471.2.S1_at11/111+26853580..26858468expressed protein
LOC_Os01g46600Os.46021.1.S1_at8/111+26858869..26859332seed maturation protein PM41, putative, expressed
LOC_Os01g46610Os.12610.1.S1_at11/111+26859919..26863985Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g46620OsAffx.23689.1.S1_at8/111+26867268..26867621hypothetical protein
LOC_Os01g46626NANA1+26872629..26876928retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g46632Os.45173.1.S1_x_at1/111+26879163..26882391retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g46640OsAffx.11492.1.S1_at11/111+26886103..26886951hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004450molecular_functionisocitrate dehydrogenase (NADP+) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12610.1.S1_at--1149--4891Chr01:26860831..26860855 (25 bp)
GCTTCAATCTTTGCTTGGACCAGAG
LOC_Os01g46610
Os.12610.1.S1_at--257--4871Chr01:26860566..26860590 (25 bp)
GCTAGACTTCTTGACTTTGCACTAA
LOC_Os01g46610
Os.12610.1.S1_at--829--1591Chr01:26860534..26860558 (25 bp)
AGCTGCTTGCGTTGGAACCGTGGAA
LOC_Os01g46610
Os.12610.1.S1_at--48--691Chr01:26860500..26860524 (25 bp)
ATGACCAAAGACCTTGCTCTTCTTA
LOC_Os01g46610
Os.12610.1.S1_at--444--3751Chr01:26860484..26860508 (25 bp)
CTCTTCTTATTCACGGGTCTTCAAA
LOC_Os01g46610
Os.12610.1.S1_at--945--1391Chr01:26860274..26860298 (25 bp)
AGACTGGCAGCCAACTGAGCTTTTT
LOC_Os01g46610
Os.12610.1.S1_at--588--1271Chr01:26860246..26860270 (25 bp)
AGATACTCTTGCCAACTTCAGTGCT
LOC_Os01g46610
Os.12610.1.S1_at--754--8331Chr01:26860194..26860218 (25 bp)
GGCTGTATCACCATTACCATTCGAG
LOC_Os01g46610
Os.12610.1.S1_at--995--91Chr01:26860176..26860200 (25 bp)
ATTCGAGTTCTCATTCTGGACTGAA
LOC_Os01g46610
Os.12610.1.S1_at--281--51Chr01:26860127..26860151 (25 bp)
ATTGTTGTCGATCCAAGCAGTCCAT
LOC_Os01g46610
Os.12610.1.S1_at--721--10351Chr01:26860028..26860052 (25 bp)
TTTATCCCTATCAGTTAGCGTCCGA
LOC_Os01g46610
Target Sequence 
GCTTCAATCTTTGCTTGGACCAGAGGACTTGCACACAGGGCAAAGCTTGACGACAATGCTAGACTTCTTGACTTTGCACT
AAAACTTGAAGCTGCTTGCGTTGGAACCGTGGAATCTGGGAAGATGACCAAAGACCTTGCTCTTCTTATTCACGGGTCTT
CAAACGTCACAAGAAGCCATTACCTGAACACTGAAGAGTTCATTGATGCGGTTGCTGCGGAGCTCCGGTCAAGACTGGCA
GCCAACTGAGCTTTTTACAAGATACTCTTGCCAACTTCAGTGCTTCATTTCCCTTCTTTTAAAGTCATTTTGGCTGTATC
ACCATTACCATTCGAGTTCTCATTCTGGACTGAATGAACATTTACAGCATCGGTACAAATTGTTGTCGATCCAAGCAGTC
CATAGATGCTGATATCACGTAGACGGGACCTCCCAAATAAAGGATATATAGAACAATCTGTCATTGCTGATAGTTGTTTT
ATCCCTATCAGTTAGCGTCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12610.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis