Browse Element(s) Details


Os.25571.1.S1_at

Description gb:CA998377
DB_XREF= gi:27554477
DB_XREF=S345D_D12
TID=Os.25571.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.25571 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0744011/11Protein BABY BOOM 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07400Os.22305.1.S1_at11/118+4147023..4150907Cullin family protein, expressed
LOC_Os08g07410NANA8+4153484..4156789retrotransposon protein, putative, unclassified
LOC_Os08g07420NANA8+4157400..4163555retrotransposon protein, putative, unclassified
LOC_Os08g07430Os.53189.1.S1_at11/118+4165918..4169212expressed protein
LOC_Os08g07440Os.25571.1.S1_at11/118+4169528..4172195Protein BABY BOOM 2, putative, expressed
LOC_Os08g07440Os.10323.1.S1_at11/118+4169528..4172195Protein BABY BOOM 2, putative, expressed
LOC_Os08g07450OsAffx.29079.1.S1_at11/118+4173245..4174195Glutaredoxin family protein
LOC_Os08g07460NANA8+4177780..4180707transposon protein, putative, unclassified
LOC_Os08g07470NANA8+4183160..4183896hypothetical protein
LOC_Os08g07480Os.54855.1.S1_at11/118+4185262..4194621DNA-directed RNA polymerase, beta subunit family protein, expressed
LOC_Os08g07480OsAffx.29080.1.S1_x_at10/118+4185262..4194621DNA-directed RNA polymerase, beta subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007276biological_processgametogenesis
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0042127biological_processregulation of cell proliferation
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25571.1.S1_at--74--4411Chr08:4171446..4171470 (25 bp)
GCCATGAAATTAGCACTGGTTTAGT
LOC_Os08g07440
Os.25571.1.S1_at--825--5571Chr08:4171403..4171427 (25 bp)
GAAAGTGCCGAGATGGTACACGCTC
LOC_Os08g07440
Os.25571.1.S1_at--130--7031Chr08:4171388..4171412 (25 bp)
GTACACGCTCGCTTGGTAGCTATGC
LOC_Os08g07440
Os.25571.1.S1_at--802--3611Chr08:4171377..4171401 (25 bp)
CTTGGTAGCTATGCGAAACAGCTGT
LOC_Os08g07440
Os.25571.1.S1_at--685--5531Chr08:4171363..4171387 (25 bp)
GAAACAGCTGTGAGTTATTCCAATT
LOC_Os08g07440
Os.25571.1.S1_at--707--6071Chr08:4171352..4171376 (25 bp)
GAGTTATTCCAATTACATTTCGTAT
LOC_Os08g07440
Os.25571.1.S1_at--735--131Chr08:4171341..4171365 (25 bp)
ATTACATTTCGTATCATCACAGATT
LOC_Os08g07440
Os.25571.1.S1_at--838--3551Chr08:4171327..4171351 (25 bp)
CATCACAGATTTTTAGCTAGAGGCT
LOC_Os08g07440
Os.25571.1.S1_at--573--1051Chr08:4171295..4171319 (25 bp)
AGGTGGTTGTTGATAGCCGTATGCA
LOC_Os08g07440
Os.25571.1.S1_at--899--8831Chr08:4171285..4171309 (25 bp)
TGATAGCCGTATGCAATTTATTTGT
LOC_Os08g07440
Os.25571.1.S1_at--1024--9031Chr08:4171260..4171284 (25 bp)
TGCAGGGTGCACATATGGATATATT
LOC_Os08g07440
Target Sequence 
GCCATGAAATTAGCACTGGTTTAGTTTAGTTTAGTTTAGTTTGGAAAGTGCCGAGATGGTACACGCTCGCTTGGTAGCTA
TGCGAAACAGCTGTGAGTTATTCCAATTACATTTCGTATCATCACAGATTTTTAGCTAGAGGCTTGACAACAGGTGGTTG
TTGATAGCCGTATGCAATTTATTTGTTGCAGGGTGCACATATGGATATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis