Browse Element(s) Details


Os.22305.1.S1_at

Description gb:AK066234.1
DB_XREF= gi:32976252
TID=Os.22305.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013058A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058A05, full insert sequence.
FL= gb:AK061805.1 gb:AK066234.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0740011/11Cullin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07370OsAffx.16873.1.S1_at11/118+4120724..4122411RGH1A, putative
LOC_Os08g07380Os.49373.1.S1_at1/118+4126151..4137217retrotransposon protein, putative, unclassified, expressed
LOC_Os08g07390OsAffx.16875.1.S1_x_at11/118+4140704..4143654Mla1, putative, expressed
LOC_Os08g07390Os.8936.1.S1_at10/118+4140704..4143654Mla1, putative, expressed
LOC_Os08g07400Os.22305.1.S1_at11/118+4147023..4150907Cullin family protein, expressed
LOC_Os08g07410NANA8+4153484..4156789retrotransposon protein, putative, unclassified
LOC_Os08g07420NANA8+4157400..4163555retrotransposon protein, putative, unclassified
LOC_Os08g07430Os.53189.1.S1_at11/118+4165918..4169212expressed protein
LOC_Os08g07440Os.25571.1.S1_at11/118+4169528..4172195Protein BABY BOOM 2, putative, expressed
LOC_Os08g07440Os.10323.1.S1_at11/118+4169528..4172195Protein BABY BOOM 2, putative, expressed
LOC_Os08g07450OsAffx.29079.1.S1_at11/118+4173245..4174195Glutaredoxin family protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007049biological_processcell cycle
GO:0009639biological_processresponse to red or far red light
GO:0009733biological_processresponse to auxin stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009911biological_processpositive regulation of flower development
GO:0009960biological_processendosperm development
GO:0000151cellular_componentubiquitin ligase complex
GO:0000794cellular_componentcondensed nuclear chromosome
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22305.1.S1_at--986--1151Chr08:4147552..4147576 (25 bp)
AGTCTCTCGCGCTTGTGAAGGGCAA
LOC_Os08g07400
Os.22305.1.S1_at--939--5431Chr08:4147527..4147551 (25 bp)
GAACGTTCTGCGCAAGGAACCTATG
LOC_Os08g07400
Os.22305.1.S1_at--1061--10091Chr08:4147506..4147530 (25 bp)
TATGAGCAGGGACATCTCCGACGAT
LOC_Os08g07400
Os.22305.1.S1_at--335--1891Chr08:4147465..4147489 (25 bp)
ACGATAAGTTCACCAGCAAGCTGTT
LOC_Os08g07400
Os.22305.1.S1_at--681--9371Chr08:4147345..4147369 (25 bp)
TCGAGGCGGCCATCGTGAGGATCAT
LOC_Os08g07400
Os.22305.1.S1_at--771--6831Chr08:4147255..4147279 (25 bp)
GTTTCATGCCGAACCCTGTGGTGAT
LOC_Os08g07400
Os.22305.1.S1_at--1141--6091Chr08:4147217..4147241 (25 bp)
GAGTCTCTGATTGAGCGCGAGTTCT
LOC_Os08g07400
Os.22305.1.S1_at--173--5551Chr08:4147170..4147194 (25 bp)
GAAACTGTACCGGTATCTTGCATAA
LOC_Os08g07400
Os.22305.1.S1_at--36--2631Chr08:4147099..4147123 (25 bp)
AACCGTGGTCTATGTATACCTGTTA
LOC_Os08g07400
Os.22305.1.S1_at--152--2831Chr08:4147047..4147071 (25 bp)
AAGTTTTGGCCGCTGGATCCAGGTA
LOC_Os08g07400
Os.22305.1.S1_at--1027--6351Chr08:4147032..4147056 (25 bp)
GATCCAGGTAACATGTGGTCTTCTT
LOC_Os08g07400
Target Sequence 
AGTCTCTCGCGCTTGTGAAGGGCAAGAACGTTCTGCGCAAGGAACCTATGAGCAGGGACATCTCCGACGATGACAACTTN
TACGTCAACGATAAGTTCACCAGCAAGCTGTTCAAGGTGAAGATCGGCACNGGTGGCGACACAGAAGGAGTCTGAGCCAG
AGAAGATGGAGACCCGGCAGAGAGTCGAGGAGGACAGGAAGCCTCAGATCGAGGCGGCCATCGTGAGGATCATGAAGTCG
AGGAGAGTGCTGGATCACAACAGCATAGTGACAGAGGTGACGAAGCAGCTGCAGCCTCGTTTCATGCCGAACCCTGTGGT
GATCAAGAAGAGAGTCGAGTCTCTGATTGAGCGCGAGTTCTTGGAGAGGGACAAGACAGACAGGAAACTGTACCGGTATC
TTGCATAATTACTCTTTTTTTTTTCTTCTGGATTCTTTAACCTGACCATAAGTAAACCGTGGTCTATGTATACCTGTTAT
ATCACGATAATGCTTTTGGTTGGATTAAGTTTTGGCCGCTGGATCCAGGTAACATGTGGTCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis