Browse Element(s) Details


OsAffx.29079.1.S1_at

Description tigr:9636.m00683
TID=OsAffx.29079.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glutaredoxin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0745011/11Glutaredoxin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07400Os.22305.1.S1_at11/118+4147023..4150907Cullin family protein, expressed
LOC_Os08g07410NANA8+4153484..4156789retrotransposon protein, putative, unclassified
LOC_Os08g07420NANA8+4157400..4163555retrotransposon protein, putative, unclassified
LOC_Os08g07430Os.53189.1.S1_at11/118+4165918..4169212expressed protein
LOC_Os08g07440Os.25571.1.S1_at11/118+4169528..4172195Protein BABY BOOM 2, putative, expressed
LOC_Os08g07440Os.10323.1.S1_at11/118+4169528..4172195Protein BABY BOOM 2, putative, expressed
LOC_Os08g07450OsAffx.29079.1.S1_at11/118+4173245..4174195Glutaredoxin family protein
LOC_Os08g07460NANA8+4177780..4180707transposon protein, putative, unclassified
LOC_Os08g07470NANA8+4183160..4183896hypothetical protein
LOC_Os08g07480Os.54855.1.S1_at11/118+4185262..4194621DNA-directed RNA polymerase, beta subunit family protein, expressed
LOC_Os08g07480OsAffx.29080.1.S1_x_at10/118+4185262..4194621DNA-directed RNA polymerase, beta subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29079.1.S1_at--1030--9051Chr08:4173810..4173834 (25 bp)
TGCGGGCTTTACCTGGTTTTGACCA
LOC_Os08g07450
OsAffx.29079.1.S1_at--1009--10391Chr08:4173794..4173818 (25 bp)
TTTTGACCAGGGAATCATGTCCGGC
LOC_Os08g07450
OsAffx.29079.1.S1_at--204--9331Chr08:4173736..4173760 (25 bp)
TCGCCGGAGCGGGAGAATCCGACGA
LOC_Os08g07450
OsAffx.29079.1.S1_at--546--5791Chr08:4173664..4173688 (25 bp)
GACGACATGGGCACACCGGCGGCTC
LOC_Os08g07450
OsAffx.29079.1.S1_at--712--8351Chr08:4173647..4173671 (25 bp)
GGCGGCTCGCGACATCCCGGAGGTG
LOC_Os08g07450
OsAffx.29079.1.S1_at--264--2071Chr08:4173636..4173660 (25 bp)
ACATCCCGGAGGTGACGGGCTTCGT
LOC_Os08g07450
OsAffx.29079.1.S1_at--316--1051Chr08:4173627..4173651 (25 bp)
AGGTGACGGGCTTCGTGCGCGCGCG
LOC_Os08g07450
OsAffx.29079.1.S1_at--723--4571Chr08:4173605..4173629 (25 bp)
GCGCGTCGACGAGTTCCACGAGAAG
LOC_Os08g07450
OsAffx.29079.1.S1_at--854--8411Chr08:4173551..4173575 (25 bp)
GGCCGATGAAGAAGCCCTCGACGTC
LOC_Os08g07450
OsAffx.29079.1.S1_at--69--3931Chr08:4173508..4173532 (25 bp)
CGGCCGGAGCGCGTGACGAAGGCAT
LOC_Os08g07450
OsAffx.29079.1.S1_at--1161--8351Chr08:4173448..4173472 (25 bp)
GGCGTCCGCCGGACGTTCGAGGACG
LOC_Os08g07450
Target Sequence 
TGCGGGCTTTACCTGGTTTTGACCAGGGAATCATGTCCGGCCTCCGGGGCATCGTGGCGGCGGAGCCCTCGCGGTCGCCG
GAGCGGGAGAATCCGACGACGCCGAAGGCGAGCGAGGAGGAGGCGGCGGCGGCGGCGGCGGCGTTCGACGACATGGGCAC
ACCGGCGGCTCGCGACATCCCGGAGGTGACGGGCTTCGTGCGCGCGCGCGTCGACGAGTTCCACGAGAAGATAGAGAAGA
AGAAGAAGGCGGCCAAGGCGGCCGATGAAGAAGCCCTCGACGTCGCGCCGCCGCCCCCGCGGCGGCCGGAGCGCGTGACG
AAGGCATCCGCCGTGGTGGTGGTGTACTTCACCAGCCTCCGCGGCGTCCGCCGGACGTTCGAGGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis