Browse Element(s) Details


OsAffx.16875.1.S1_x_at

Description tigr:9636.m00677
TID=OsAffx.16875.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RGH1A
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0739011/11Mla1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07360Os.26886.3.S1_x_at6/118+4112233..4117415transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g07360Os.26886.1.S1_x_at5/118+4112233..4117415transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g07370OsAffx.16873.1.S1_at11/118+4120724..4122411RGH1A, putative
LOC_Os08g07380Os.49373.1.S1_at1/118+4126151..4137217retrotransposon protein, putative, unclassified, expressed
LOC_Os08g07390OsAffx.16875.1.S1_x_at11/118+4140704..4143654Mla1, putative, expressed
LOC_Os08g07390Os.8936.1.S1_at10/118+4140704..4143654Mla1, putative, expressed
LOC_Os08g07400Os.22305.1.S1_at11/118+4147023..4150907Cullin family protein, expressed
LOC_Os08g07410NANA8+4153484..4156789retrotransposon protein, putative, unclassified
LOC_Os08g07420NANA8+4157400..4163555retrotransposon protein, putative, unclassified
LOC_Os08g07430Os.53189.1.S1_at11/118+4165918..4169212expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16875.1.S1_x_at--1028--5251Chr08:4142759..4142783 (25 bp)
GAATCCCTTGCATTTAGTGTCCATG
LOC_Os08g07390
OsAffx.16875.1.S1_x_at--938--10071Chr08:4142745..4142769 (25 bp)
TAGTGTCCATGTGCGGTTCCTCAAA
LOC_Os08g07390
OsAffx.16875.1.S1_x_at--1078--5791Chr08:4142720..4142744 (25 bp)
GACGCGGACCTGCTTTGTTTCAAAA
LOC_Os08g07390
OsAffx.16875.1.S1_x_at--393--731Chr08:4142597..4142621 (25 bp)
ATGTTGGAGCATGCAGCCATCGTCC
LOC_Os08g07390
OsAffx.16875.1.S1_x_at--463--10191Chr08:4142528..4142552 (25 bp)
TATATCATGCTCTTACCTGACCAAG
LOC_Os08g07390
OsAffx.16875.1.S1_x_at--997--211Chr08:4142182..4142206 (25 bp)
ATTTGGACTTCCGATGGCTGTTGAT
LOC_Os08g07390
OsAffx.16875.1.S1_x_at--889--4731Chr08:4142166..4142190 (25 bp)
GCTGTTGATGAATCCACGCGTCGAG
LOC_Os08g07390
OsAffx.16875.1.S1_x_at--865--3151Chr08:4142140..4142164 (25 bp)
AATTCTGTGTCTCCATAAACTGCGA
LOC_Os08g07390
OsAffx.16875.1.S1_x_at--1112--1251Chr08:4142072..4142096 (25 bp)
AGATATGCAGTCGATGTCCATCCCA
LOC_Os08g07390
OsAffx.16875.1.S1_x_at--354--3151Chr08:4142048..4142072 (25 bp)
AATTGTCCCACTCTTGAACTGGTGA
LOC_Os08g07390
OsAffx.16875.1.S1_x_at--852--1251Chr08:4142013..4142037 (25 bp)
AGATAAGATGGTGCTACCCAACCCC
LOC_Os08g07390
Target Sequence 
GAATCCCTTGCATTTAGTGTCCATGTGCGGTTCCTCAAAGACGCGGACCTGCTTTGTTTCAAAAAACTTGGCTTGGTGAA
CCTCCCTAGCTCGCTTCAGCGAGTCACCGTTGAAATCAACTCTTGGGATGCCCATGATACAGAGGTGGAAGAAGCGGAGG
CCATGTTGGAGCATGCAGCCATCGTCCATCCTAATCATCCCATCTTCCAAACCACACGGCCATTTGGAAAATATATCATG
CTCTTACCTGACCAAGAGCCAAGCAGCACCAATCCTAAAGTTGATAGATGTGATGTCAATCTGCGAAAGAACGACGGAGA
CCATTTGGACTTCCGATGGCTGTTGATGAATCCACGCGTCGAGAAATTCTGTGTCTCCATAAACTGCGAGAATGCTAGTC
TTGAGGAGGTTGAGGAAGCAGAGGCGGCTGCAAGATATGCAGTCGATGTCCATCCCAATTGTCCCACTCTTGAACTGGTG
AGATATGGTGAAGATAAGATGGTGCTACCCAACCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16875.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis