Browse Element(s) Details


Os.25687.1.S1_x_at

Description gb:AK068993.1
DB_XREF= gi:32979017
TID=Os.25687.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.25687 (NCBI UniGene Cluster)
UG_TITLE=SS577 mRNA for phenylalanine ammonia-lyase, partial sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001A06, full insert sequence.
FL= gb:AK068993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4168011/11Phenylalanine ammonia-lyase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g41640NANA2+24974835..24975848transposon protein, putative, unclassified
LOC_Os02g41650Os.28397.1.S1_at11/112+24979019..24983519Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41650Os.28397.1.S2_x_at11/112+24979019..24983519Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41650Os.28397.1.S3_at11/112+24979019..24983519Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41659NANA2+24985348..24986192NA
LOC_Os02g41670Os.10930.1.S1_at9/112+24987013..24989529Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41670Os.28397.1.S2_x_at1/112+24987013..24989529Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41680Os.25687.1.S1_at11/112+25000626..25003242Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41680Os.25687.1.S1_x_at11/112+25000626..25003242Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41690OsAffx.31069.1.S1_x_at1/112+25026348..25029190retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0006979biological_processresponse to oxidative stress
GO:0009611biological_processresponse to wounding
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0045548molecular_functionphenylalanine ammonia-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25687.1.S1_x_at--924--8231Chr02:25001053..25001077 (25 bp)
GGCACGGCGGCGATTCCCAGCAGAA
LOC_Os02g41680
Os.25687.1.S1_x_at--805--4731Chr02:25000836..25000860 (25 bp)
GCTGAACTAGTGAACCGATTAGCTG
LOC_Os02g41680
Os.25687.1.S1_x_at--572--7351Chr02:25000827..25000851 (25 bp)
GTGAACCGATTAGCTGAATAACAGT
LOC_Os02g41680
Os.25687.1.S1_x_at--849--8551Chr02:25000796..25000820 (25 bp)
TGGAGGCGTGCGGTGTTGTTTTTAT
LOC_Os02g41680
Os.25687.1.S1_x_at--446--3571Chr02:25000713..25000737 (25 bp)
CATAGCGGCAAGCATGCAACAGCAA
LOC_Os02g41680
Os.25687.1.S1_x_at--289--4991Chr02:25000702..25000726 (25 bp)
GCATGCAACAGCAAAACTTGGTACG
LOC_Os02g41680
Os.25687.1.S1_x_at--652--3271Chr02:25000691..25000715 (25 bp)
CAAAACTTGGTACGAGTGGCAGGTT
LOC_Os02g41680
Os.25687.1.S1_x_at--871--1871Chr02:25000680..25000704 (25 bp)
ACGAGTGGCAGGTTTCAAAAGCAAC
LOC_Os02g41680
Os.25687.1.S1_x_at--478--5011Chr02:25000673..25000697 (25 bp)
GCAGGTTTCAAAAGCAACTAGTGTT
LOC_Os02g41680
Os.25687.1.S1_x_at--98--5091Chr02:25000660..25000684 (25 bp)
GCAACTAGTGTTGTAACATATAAGT
LOC_Os02g41680
Os.25687.1.S1_x_at--129--411Chr02:25000628..25000652 (25 bp)
ATCAGAGTGTTGCAAATCATTAATT
LOC_Os02g41680
Target Sequence 
GGCACGGCGGCGATTCCCAGCAGAATCNCCGAGTGCAGGTNGTATCCGCTNTACCGGTTNGTGCGNGAGGAGCTNGGAAC
AAAGTACCTGACCGGNGAGAAGACACGATCGCCTGGNGAGGAGCTGAACAAGGTTNTTGTGGCTATCAACGAAGGCAAGC
NCATCGACCCGTTGCTNGAGTGCCTCAAGGAGTGGAACGGCGAGCCCCTGCCAATNTGCTGAACTAGTGAACCGATTAGC
TGAATAACAGTGGAGTGTGGAGGCGTGCGGTGTTGTTTTTATNTGGTGAATATTTTATTTTTACNCTTATNTTTGTGTTA
CTCAAAAGAATTNTTNGTTGCATAGCGGCAAGCATGCAACAGCAAAACTTGGTACGAGTGGCAGGTTTCAAAAGCAACTA
GTGTTGTAACATATAAGTTTTGGANATCAGAGTGTTGCAAATCATTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25687.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis