Browse Element(s) Details


Os.28397.1.S3_at

Description gb:AK120127.1
DB_XREF= gi:37989750
TID=Os.28397.1
CNT=243
FEA=FLmRNA
TIER=FL+Stack
STK=48
UG=Os.28397 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002F15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026F02, full insert sequence.
FL= gb:AK061959.1 gb:AK065208.1 gb:AK120127.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4165011/11Phenylalanine ammonia-lyase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g41610OsAffx.2935.1.S1_at11/112+24950936..24954077expressed protein
LOC_Os02g41620NANA2+24956570..24957011hypothetical protein
LOC_Os02g41630Os.50466.1.S1_at11/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630Os.9330.4.S1_x_at11/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630Os.9330.1.S1_x_at11/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630Os.9330.1.S2_x_at9/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630Os.9330.2.S1_a_at8/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41640NANA2+24974835..24975848transposon protein, putative, unclassified
LOC_Os02g41650Os.28397.1.S1_at11/112+24979019..24983519Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41650Os.28397.1.S2_x_at11/112+24979019..24983519Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41650Os.28397.1.S3_at11/112+24979019..24983519Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41659NANA2+24985348..24986192NA
LOC_Os02g41670Os.10930.1.S1_at9/112+24987013..24989529Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41670Os.28397.1.S2_x_at1/112+24987013..24989529Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41680Os.25687.1.S1_at11/112+25000626..25003242Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41680Os.25687.1.S1_x_at11/112+25000626..25003242Phenylalanine ammonia-lyase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0006979biological_processresponse to oxidative stress
GO:0009611biological_processresponse to wounding
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0045548molecular_functionphenylalanine ammonia-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28397.1.S3_at--116--8471Chr02:24979984..24980008 (25 bp)
TGGCCGAGTTCGAGCAGCACGTCCG
LOC_Os02g41650
Os.28397.1.S3_at--861--2611Chr02:24979892..24979916 (25 bp)
AACCGGATCAAGGAGTGCCGCTCGT
LOC_Os02g41650
Os.28397.1.S3_at--96--9331Chr02:24979771..24979795 (25 bp)
TCGCCATCAACGAGCGCAAGCACAT
LOC_Os02g41650
Os.28397.1.S3_at--1055--4131Chr02:24979741..24979765 (25 bp)
CGCTGCTCGAATGCCTCAAGGAATG
LOC_Os02g41650
Os.28397.1.S3_at--957--3731Chr02:24979727..24979751 (25 bp)
CTCAAGGAATGGAATGGCGCGCCAC
LOC_Os02g41650
Os.28397.1.S3_at--929--5311Chr02:24979654..24979678 (25 bp)
GAAGACGTATAGCAACACAAAACTG
LOC_Os02g41650
Os.28397.1.S3_at--865--6491Chr02:24979626..24979650 (25 bp)
GATAGAGAGCATTTCGAGAGTGTGA
LOC_Os02g41650
Os.28397.1.S3_at--303--1971Chr02:24979529..24979553 (25 bp)
ACTGTTGCTGTTTCAGCTTCTGCGG
LOC_Os02g41650
Os.28397.1.S3_at--263--6831Chr02:24979520..24979544 (25 bp)
GTTTCAGCTTCTGCGGTTGCCATAA
LOC_Os02g41650
Os.28397.1.S3_at--445--10671Chr02:24979504..24979528 (25 bp)
TTGCCATAACCTGCAGTTCCGCATG
LOC_Os02g41650
Os.28397.1.S3_at--282--5011Chr02:24979484..24979508 (25 bp)
GCATGGCCTGGCACGCAGCTTTCTG
LOC_Os02g41650
Target Sequence 
TGGCCGAGTTCGAGCAGCACGTCCGCGCCGCGCTGCCCAAGGAGGTGGAGGCCGCCCGCGCCGCCGTCGAGAACGGCACC
CCGCTCGTCCCCAACCGGATCAAGGAGTGCCGCTCGTACCCGCTCTACCGGTTCGTGCGCGAGGAGGTCGGCACCGAGTA
CCTCACCGGCGAGAAGACGCGGTCGCCCGGCGAGGAGCTGAACAAGGTGCTCGTCGCCATCAACGAGCGCAAGCACATCG
ACCCGCTGCTCGAATGCCTCAAGGAATGGAATGGCGCGCCACTGCCACTCTGCTGAACAGAAATGGAATANCTAAAAAAA
ATGCAAAACAAGAAGACGTATAGCAACACAAAACTGAAAGATAGAGAGCATTTCGAGAGTGTGAATGTTTTCTACTATNT
CTAGATGAACATGGTGATGATACTATTTTACGGTTCTTTGTAGTTAACTTGATGTTACTGTTGCTGTTTCAGCTTCTGCG
GTTGCCATAACCTGCAGTTCCGCATGGCCTGGCACGCAGCTTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28397.1.S3_at     

Putative homologies in rice

Putative homologies in arabidopsis