Browse Element(s) Details


Os.9330.1.S1_x_at

Description gb:CB643494
DB_XREF= gi:29638485
DB_XREF=OSJNEb04D11.r
CLONE=OSJNEb04D11
TID=Os.9330.1
CNT=657
FEA=FLmRNA
TIER=Stack
STK=129
UG=Os.9330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108N04, full insert sequence
FL= gb:AK102817.1 gb:AK058306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4163011/11Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g437601/11Phenylalanine ammonia-lyase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g41590Os.6634.1.S1_at11/112+24934935..24940779Adenosine kinase 2, putative, expressed
LOC_Os02g41600NANA2+24946686..24947233hypothetical protein
LOC_Os02g41610OsAffx.2935.1.S1_at11/112+24950936..24954077expressed protein
LOC_Os02g41620NANA2+24956570..24957011hypothetical protein
LOC_Os02g41630Os.50466.1.S1_at11/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630Os.9330.4.S1_x_at11/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630Os.9330.1.S1_x_at11/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630Os.9330.1.S2_x_at9/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630Os.9330.2.S1_a_at8/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41640NANA2+24974835..24975848transposon protein, putative, unclassified
LOC_Os02g41650Os.28397.1.S1_at11/112+24979019..24983519Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41650Os.28397.1.S2_x_at11/112+24979019..24983519Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41650Os.28397.1.S3_at11/112+24979019..24983519Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41659NANA2+24985348..24986192NA
LOC_Os02g41670Os.10930.1.S1_at9/112+24987013..24989529Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41670Os.28397.1.S2_x_at1/112+24987013..24989529Phenylalanine ammonia-lyase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0006979biological_processresponse to oxidative stress
GO:0009611biological_processresponse to wounding
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0045548molecular_functionphenylalanine ammonia-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9330.1.S1_x_at--1157--8971Chr02:24969002..24969026 (25 bp)
TGAACGAGATGGACCCGCTGCTGAA
LOC_Os02g41630
Os.9330.1.S1_x_at--961--3972Chr04:25689064..25689103 (25 bp)
CGGTGATCGACGTCCACCGCGGCAA
LOC_Os04g43760
Os.9330.1.S1_x_at--672--7731Chr02:24968796..24968820 (25 bp)
GGTGTGTCCATGGACAACGCCCGTC
LOC_Os02g41630
Os.9330.1.S1_x_at--761--8671Chr02:24968794..24968818 (25 bp)
TGTGTCCATGGACAACGCCCGTCTC
LOC_Os02g41630
Os.9330.1.S1_x_at--315--2551Chr02:24968703..24968727 (25 bp)
AACGGGCTGACCTCCAACCTGGCCG
LOC_Os02g41630
Os.9330.1.S1_x_at--1115--3991Chr02:24968545..24968569 (25 bp)
CGTGAACTCGCTGGGTCTCGTCTCG
LOC_Os02g41630
Os.9330.1.S1_x_at--9--8991Chr02:24968543..24968567 (25 bp)
TGAACTCGCTGGGTCTCGTCTCGGC
LOC_Os02g41630
Os.9330.1.S1_x_at--574--4131Chr02:24968537..24968561 (25 bp)
CGCTGGGTCTCGTCTCGGCCAGGAA
LOC_Os02g41630
Os.9330.1.S1_x_at--1004--3871Chr02:24968535..24968559 (25 bp)
CTGGGTCTCGTCTCGGCCAGGAAGA
LOC_Os02g41630
Os.9330.1.S1_x_at--751--4011Chr02:24968527..24968551 (25 bp)
CGTCTCGGCCAGGAAGACCCTGGAG
LOC_Os02g41630
Os.9330.1.S1_x_at--323--9511Chr02:24968525..24968549 (25 bp)
TCTCGGCCAGGAAGACCCTGGAGGC
LOC_Os02g41630
Target Sequence 
TGAACGAGATGGACCCGCTGCTGAAGCCGAAGCAGGACAGGTACGCGCTCCGCACGTCGCCGCAGTGGCTCGGCCCGCAG
ATCGAGGTCATCCGCGCCGCCACCAAGTCCATCGAGCGCGAGGTCAACTCCGTGAACGACAACCCGGTGATCGACGTCCA
CCGCGGCAAGGCGCTCCACGGCGGCAACTTCCAGGGCACCCCCATCGGTGTGTCCATGGACAACGCCCGTCTCGCCATCG
CCAACATCGGCAAGCTCATGTTCGCGCAGTTCTCCGAGCTCGTGAACGAGTTCTACAACAACGGGCTGACCTCCAACCTG
GCCGGCAGCCGCAACCCGAGCTTGGACTACGGGTTCAAGGGCACCGAGATCGCCATGGCCTCCTACTGCTCTGAGCTCCA
GTACCTCGCCAACCCCATCACCAACCATGTCCAGAGCGCGGAGCAGCACAACCAGGACGTGAACTCGCTGGGTCTCGTCT
CGGCCAGGAAGACCCTGGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9330.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis