Browse Element(s) Details


Os.10930.1.S1_at

Description gb:BI806747
DB_XREF= gi:15853951
DB_XREF=S077A06
CLONE=S077A06
TID=Os.10930.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10930 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:S52990 (A.thaliana) S52990 phenylalanine ammonia-lyase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g416709/11Phenylalanine ammonia-lyase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g41630Os.50466.1.S1_at11/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630Os.9330.4.S1_x_at11/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630Os.9330.1.S1_x_at11/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630Os.9330.1.S2_x_at9/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630Os.9330.2.S1_a_at8/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41640NANA2+24974835..24975848transposon protein, putative, unclassified
LOC_Os02g41650Os.28397.1.S1_at11/112+24979019..24983519Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41650Os.28397.1.S2_x_at11/112+24979019..24983519Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41650Os.28397.1.S3_at11/112+24979019..24983519Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41659NANA2+24985348..24986192NA
LOC_Os02g41670Os.10930.1.S1_at9/112+24987013..24989529Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41670Os.28397.1.S2_x_at1/112+24987013..24989529Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41680Os.25687.1.S1_at11/112+25000626..25003242Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41680Os.25687.1.S1_x_at11/112+25000626..25003242Phenylalanine ammonia-lyase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0006979biological_processresponse to oxidative stress
GO:0009611biological_processresponse to wounding
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0045548molecular_functionphenylalanine ammonia-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10930.1.S1_at--667--5151Chr02:24987449..24987473 (25 bp)
GCAACGCCCAACAGAATCACCGAGT
LOC_Os02g41670
Os.10930.1.S1_at--250--4371Chr02:24987413..24987437 (25 bp)
CCACTGTACCGGTTTGTGCGCGAGG
LOC_Os02g41670
Os.10930.1.S1_at--83--4631Chr02:24987394..24987418 (25 bp)
GCGAGGAGCTCGGAACCGCGTACCT
LOC_Os02g41670
Os.10930.1.S1_at--729--4431Chr02:24987317..24987341 (25 bp)
GCCATCAACCAAGGCAAGCACATTG
LOC_Os02g41670
Os.10930.1.S1_at--650--3831Chr02:24987243..24987267 (25 bp)
CTGCTAAACCCCTGTATCAGAACCT
LOC_Os02g41670
Os.10930.1.S1_at--332--8771Chr02:24987231..24987255 (25 bp)
TGTATCAGAACCTCACAGGAGATGA
LOC_Os02g41670
Os.10930.1.S1_at--933--6071Chr02:24987175..24987199 (25 bp)
GAGTAGTGTGGATTATACCAGTACA
LOC_Os02g41670
Os.10930.1.S1_at--652--9731NONE
TCAATGTACACCTGCAATGCCACAA
NONE
Os.10930.1.S1_at--881--4271NONE
CCTGCAATGCCACAACCTGGTAGGG
NONE
Os.10930.1.S1_at--766--1071Chr02:24987072..24987096 (25 bp)
AGGGAATAACCTGGCAAGCGGCTAA
LOC_Os02g41670
Os.10930.1.S1_at--964--5231Chr02:24987069..24987093 (25 bp)
GAATAACCTGGCAAGCGGCTAAAGT
LOC_Os02g41670
Target Sequence 
GCAACGCCCAACAGAATCACCGAGTNCCGCTCCTACCCACTGTACCGGTTTGTGCGCGAGGAGCTCGGAACCGCGTACCT
CACCGGCGAGAAGACGCGGTCGCCCGGCGAGGAGCTGAACAAGGTGCTCGTCGCCATCAACCAAGGCAAGCACATTGATC
CGCTGCTTGAGTGTCTCAAGGAGTGGAACGGCGCGCCCCTGCCCATCTGCTAAACCCCTGTATCAGAACCTCACAGGAGA
TGATGAGATGAGTACAGAGGTGGTGGTTTGTTTCGAGTAGTGTGGATTATACCAGTACAAGTAGCTGATCAAACTTTTTT
TATACATTTGTTGTGTTAAGGATTCTTCAATGTACACCTGCAATGCCACAACCTGGTAGGGAATAACCTGGCAAGCGGCT
AAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis