Browse Element(s) Details

Os.9330.2.S1_a_at

Description

gb:AK060724.1
DB_XREF= gi:32970742
TID=Os.9330.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108N04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-G08, full insert sequence.
FL= gb:AK060724.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os02g41630	8/11	Phenylalanine ammonia-lyase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os02g41590	Os.6634.1.S1_at	11/11	2	+	24934935..24940779	Adenosine kinase 2, putative, expressed
LOC_Os02g41600	NA	NA	2	+	24946686..24947233	hypothetical protein
LOC_Os02g41610	OsAffx.2935.1.S1_at	11/11	2	+	24950936..24954077	expressed protein
LOC_Os02g41620	NA	NA	2	+	24956570..24957011	hypothetical protein
LOC_Os02g41630	Os.50466.1.S1_at	11/11	2	+	24964832..24971418	Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630	Os.9330.4.S1_x_at	11/11	2	+	24964832..24971418	Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630	Os.9330.1.S1_x_at	11/11	2	+	24964832..24971418	Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630	Os.9330.1.S2_x_at	9/11	2	+	24964832..24971418	Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630	Os.9330.2.S1_a_at	8/11	2	+	24964832..24971418	Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41640	NA	NA	2	+	24974835..24975848	transposon protein, putative, unclassified
LOC_Os02g41650	Os.28397.1.S1_at	11/11	2	+	24979019..24983519	Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41650	Os.28397.1.S2_x_at	11/11	2	+	24979019..24983519	Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41650	Os.28397.1.S3_at	11/11	2	+	24979019..24983519	Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41659	NA	NA	2	+	24985348..24986192	NA
LOC_Os02g41670	Os.10930.1.S1_at	9/11	2	+	24987013..24989529	Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41670	Os.28397.1.S2_x_at	1/11	2	+	24987013..24989529	Phenylalanine ammonia-lyase, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006952	biological_process	defense response
GO:0006979	biological_process	response to oxidative stress
GO:0009611	biological_process	response to wounding
GO:0009699	biological_process	phenylpropanoid biosynthesis
GO:0045548	molecular_function	phenylalanine ammonia-lyase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.9330.2.S1_a_at--356--421	1	Chr02:24967735..24967759 (25 bp)	CCGTTTGGTTTATAGTGATCTCGTG	LOC_Os02g41630
Os.9330.2.S1_a_at--339--403	1	Chr02:24967734..24967758 (25 bp)	CGTTTGGTTTATAGTGATCTCGTGT	LOC_Os02g41630
Os.9330.2.S1_a_at--414--687	1	Chr02:24967733..24967757 (25 bp)	GTTTGGTTTATAGTGATCTCGTGTT	LOC_Os02g41630
Os.9330.2.S1_a_at--448--1023	1	Chr02:24967732..24967756 (25 bp)	TTTGGTTTATAGTGATCTCGTGTTC	LOC_Os02g41630
Os.9330.2.S1_a_at--448--1083	1	Chr02:24967731..24967755 (25 bp)	TTGGTTTATAGTGATCTCGTGTTCT	LOC_Os02g41630
Os.9330.2.S1_a_at--1073--857	1	Chr02:24967730..24967754 (25 bp)	TGGTTTATAGTGATCTCGTGTTCTT	LOC_Os02g41630
Os.9330.2.S1_a_at--682--787	1	Chr02:24967729..24967753 (25 bp)	GGTTTATAGTGATCTCGTGTTCTTT	LOC_Os02g41630
Os.9330.2.S1_a_at--730--169	1	Chr02:24967678..24967702 (25 bp)	AGCCATGGCGGCAAAGCAAGCGGCT	LOC_Os02g41630

Target Sequence

CCGTTTGGTTTATAGTGATCTCGTGTTCTTTGTGTTAGCNNCNCNNCNNAGCTTGCCAGCCATGGCGGCAAAGCAAGCGG
CT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis