Browse Element(s) Details


OsAffx.2935.1.S1_at

Description tigr:9630.m03974
TID=OsAffx.2935.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4161011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g41580OsAffx.12442.1.S1_at11/112+24929110..24930599Protein kinase domain containing protein, expressed
LOC_Os02g41590Os.6634.1.S1_at11/112+24934935..24940779Adenosine kinase 2, putative, expressed
LOC_Os02g41600NANA2+24946686..24947233hypothetical protein
LOC_Os02g41610OsAffx.2935.1.S1_at11/112+24950936..24954077expressed protein
LOC_Os02g41620NANA2+24956570..24957011hypothetical protein
LOC_Os02g41630Os.50466.1.S1_at11/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630Os.9330.4.S1_x_at11/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630Os.9330.1.S1_x_at11/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630Os.9330.1.S2_x_at9/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41630Os.9330.2.S1_a_at8/112+24964832..24971418Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41640NANA2+24974835..24975848transposon protein, putative, unclassified
LOC_Os02g41650Os.28397.1.S1_at11/112+24979019..24983519Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41650Os.28397.1.S2_x_at11/112+24979019..24983519Phenylalanine ammonia-lyase, putative, expressed
LOC_Os02g41650Os.28397.1.S3_at11/112+24979019..24983519Phenylalanine ammonia-lyase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2935.1.S1_at--1079--6371Chr02:24952703..24952727 (25 bp)
GATCCCGTTGCTGTTGAGTTGAGTC
LOC_Os02g41610
OsAffx.2935.1.S1_at--1012--5691Chr02:24953052..24953076 (25 bp)
GACTATGTTTGTTTCACACGGATCA
LOC_Os02g41610
OsAffx.2935.1.S1_at--533--5391Chr02:24953752..24953776 (25 bp)
GAAGCATGCAGCCTAATCGATCATC
LOC_Os02g41610
OsAffx.2935.1.S1_at--1034--511Chr02:24953767..24953791 (25 bp)
ATCGATCATCAGGTCAGCAGGCTTT
LOC_Os02g41610
OsAffx.2935.1.S1_at--274--1531Chr02:24953825..24953849 (25 bp)
AGCAGTCATGTGTCAACCATCGCAA
LOC_Os02g41610
OsAffx.2935.1.S1_at--322--6351Chr02:24953853..24953877 (25 bp)
GATGCGCAGTCATCCATGGGCAGTT
LOC_Os02g41610
OsAffx.2935.1.S1_at--715--4211Chr02:24953880..24953904 (25 bp)
CCGCGACACCCTTTTGTGACAATAA
LOC_Os02g41610
OsAffx.2935.1.S1_at--41--3511Chr02:24953915..24953939 (25 bp)
CATGGACTATTTGGGCAGATCTGCT
LOC_Os02g41610
OsAffx.2935.1.S1_at--422--7671Chr02:24953979..24954003 (25 bp)
GGGATTGCGTACCATGCACCAGAAT
LOC_Os02g41610
OsAffx.2935.1.S1_at--220--551Chr02:24954002..24954026 (25 bp)
ATCCCATCTCCATTCTGTTGTAAAT
LOC_Os02g41610
OsAffx.2935.1.S1_at--895--2271Chr02:24954023..24954047 (25 bp)
AAATCCATTGCCAGCATCAGGTCTC
LOC_Os02g41610
Target Sequence 
GATCCCGTTGCTGTTGAGTTGAGTCGGTTACAGATGTTACGTTGTCTGATGACCAAGAGACATGAAGAGAAGCGGCAACA
AATTATTTTGGCACGTGAAATAGAGATGGCTGAAACTAAAAGGAAGTATGATGAGCTGATCCATAAATTGGAGATGGAAA
CATCACAGAGAAAGAAAGGAATTCAAATACTTGCTGACAAAGTCTATAAACGACAAACGTTGGCTGAGGGATTCCAGACT
ATGTTTGTTTCACACGGATCAAGAGCCAGGAGAAGCATGCAGCCTAATCGATCATCAGGTCAGCAGGCTTTGCAGATTCC
TGCATCCGTTTCAGCCCCGGCATCAGCAGTCATGTGTCAACCATCGCAACAGGATGCGCAGTCATCCATGGGCAGTTCAC
CGCGACACCCTTTTGTGACAATAAATCACCATAGCATGGACTATTTGGGCAGATCTGCTACTCCCTTGGCTCACAGTCGA
GGTGCTGGCATGGGCTCTGGGATTGCGTACCATGCACCAGAATCCCATCTCCATTCTGTTGTAAATCCATTGCCAGCATC
AGGTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis