Browse Element(s) Details


OsAffx.12442.1.S1_at

Description tigr:9630.m03971
TID=OsAffx.12442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phosphoenolpyruvate carboxylase kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4158011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g41540NANA2+24905642..24906139hypothetical protein
LOC_Os02g41550Os.19289.1.S1_a_at11/112+24909993..24916215Cryptochrome 2 apoprotein, putative, expressed
LOC_Os02g41550Os.48589.1.A1_at8/112+24909993..24916215Cryptochrome 2 apoprotein, putative, expressed
LOC_Os02g41560OsAffx.24669.1.S1_at11/112+24917999..24919480pentatricopeptide, putative
LOC_Os02g41570NANA2+24923935..24924430hypothetical protein
LOC_Os02g41580OsAffx.12442.1.S1_at11/112+24929110..24930599Protein kinase domain containing protein, expressed
LOC_Os02g41590Os.6634.1.S1_at11/112+24934935..24940779Adenosine kinase 2, putative, expressed
LOC_Os02g41600NANA2+24946686..24947233hypothetical protein
LOC_Os02g41610OsAffx.2935.1.S1_at11/112+24950936..24954077expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0004611molecular_functionphosphoenolpyruvate carboxykinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12442.1.S1_at--468--7251Chr02:24929845..24929869 (25 bp)
GTCCTCCGTGGCAGCGTCAGGTTCC
LOC_Os02g41580
OsAffx.12442.1.S1_at--828--9631Chr02:24929861..24929885 (25 bp)
TCAGGTTCCCGCCTAGGCTGTTCGC
LOC_Os02g41580
OsAffx.12442.1.S1_at--153--4391Chr02:24929903..24929927 (25 bp)
CCAAGGACCTCATGAGGCGCATGAT
LOC_Os02g41580
OsAffx.12442.1.S1_at--289--711Chr02:24929914..24929938 (25 bp)
ATGAGGCGCATGATGTGCCGCGACA
LOC_Os02g41580
OsAffx.12442.1.S1_at--928--5171Chr02:24929961..24929985 (25 bp)
GCAAGTCCTCGGTAAGAACAACCCA
LOC_Os02g41580
OsAffx.12442.1.S1_at--486--4311Chr02:24929983..24930007 (25 bp)
CCAACCAAATCCTCGAAATCTTCAT
LOC_Os02g41580
OsAffx.12442.1.S1_at--450--9631Chr02:24930004..24930028 (25 bp)
TCATGGATTTCACCTCATTTTCCGC
LOC_Os02g41580
OsAffx.12442.1.S1_at--933--4531Chr02:24930027..24930051 (25 bp)
GCCCAGTTTCCGATCCAAGAGAACA
LOC_Os02g41580
OsAffx.12442.1.S1_at--445--5511Chr02:24930047..24930071 (25 bp)
GAACAAACCATCTTATCGCTTGCCG
LOC_Os02g41580
OsAffx.12442.1.S1_at--193--10711Chr02:24930066..24930090 (25 bp)
TTGCCGCGCTGTTCGTAATGCAGGT
LOC_Os02g41580
OsAffx.12442.1.S1_at--486--10611Chr02:24930077..24930101 (25 bp)
TTCGTAATGCAGGTCACCCGTGGAT
LOC_Os02g41580
Target Sequence 
GTCCTCCGTGGCAGCGTCAGGTTCCCGCCTAGGCTGTTCGCCGGCGTGTCCCCGGCGGCCAAGGACCTCATGAGGCGCAT
GATGTGCCGCGACACCTGGAGGCGCTTCTCCGCCGAGCAAGTCCTCGGTAAGAACAACCCAACCAAATCCTCGAAATCTT
CATGGATTTCACCTCATTTTCCGCCCAGTTTCCGATCCAAGAGAACAAACCATCTTATCGCTTGCCGCGCTGTTCGTAAT
GCAGGTCACCCGTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis