Browse Element(s) Details


OsAffx.24669.1.S1_at

Description tigr:9630.m03969
TID=OsAffx.24669.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to selenium-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4156011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g41520Os.50354.1.S1_at11/112+24893654..24899093Glycosyl transferase family 8 protein, expressed
LOC_Os02g41530NANA2+24902226..24902674hypothetical protein
LOC_Os02g41540NANA2+24905642..24906139hypothetical protein
LOC_Os02g41550Os.19289.1.S1_a_at11/112+24909993..24916215Cryptochrome 2 apoprotein, putative, expressed
LOC_Os02g41550Os.48589.1.A1_at8/112+24909993..24916215Cryptochrome 2 apoprotein, putative, expressed
LOC_Os02g41560OsAffx.24669.1.S1_at11/112+24917999..24919480pentatricopeptide, putative
LOC_Os02g41570NANA2+24923935..24924430hypothetical protein
LOC_Os02g41580OsAffx.12442.1.S1_at11/112+24929110..24930599Protein kinase domain containing protein, expressed
LOC_Os02g41590Os.6634.1.S1_at11/112+24934935..24940779Adenosine kinase 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24669.1.S1_at--880--5531Chr02:24918900..24918924 (25 bp)
GAAACATCTACTCGTGGAACTCAAT
LOC_Os02g41560
OsAffx.24669.1.S1_at--603--5471Chr02:24918916..24918940 (25 bp)
GAACTCAATGATCGCTGGGCTTGCC
LOC_Os02g41560
OsAffx.24669.1.S1_at--729--891Chr02:24918960..24918984 (25 bp)
AGGCCCTGTCACTCTTCTGGAAGAT
LOC_Os02g41560
OsAffx.24669.1.S1_at--1136--2071Chr02:24919016..24919040 (25 bp)
ACATTCATTGGTTTGCTGAGCGCTT
LOC_Os02g41560
OsAffx.24669.1.S1_at--298--6111Chr02:24919064..24919088 (25 bp)
GAGGGCCGCTGGTTGTTCTACAAGA
LOC_Os02g41560
OsAffx.24669.1.S1_at--105--5251Chr02:24919093..24919117 (25 bp)
GAATCACTTTGGGATCCAGCCAGTC
LOC_Os02g41560
OsAffx.24669.1.S1_at--326--1151Chr02:24919114..24919138 (25 bp)
AGTCCCAGAGCACTATGGTCTCATG
LOC_Os02g41560
OsAffx.24669.1.S1_at--22--9731Chr02:24919188..24919212 (25 bp)
TCAAGAGCATGCCTGTGGAGCCACA
LOC_Os02g41560
OsAffx.24669.1.S1_at--30--7851Chr02:24919323..24919347 (25 bp)
GGTACATCCTCCTGTCAAACATATA
LOC_Os02g41560
OsAffx.24669.1.S1_at--859--3491Chr02:24919372..24919396 (25 bp)
CATGGCTAATGTGCGCAGGATCCTG
LOC_Os02g41560
OsAffx.24669.1.S1_at--120--5291Chr02:24919396..24919420 (25 bp)
GAAGGATCGCAAGGTCCCCAAGGGT
LOC_Os02g41560
Target Sequence 
GAAACATCTACTCGTGGAACTCAATGATCGCTGGGCTTGCCATGAACGGCAGCGAGAGGCAGGCCCTGTCACTCTTCTGG
AAGATGCAGCTGGCTGGTGTTCGACCAAATGACATAACATTCATTGGTTTGCTGAGCGCTTGCAGCCACTCAGGTCTTGT
AGACGAGGGCCGCTGGTTGTTCTACAAGATGGTGAATCACTTTGGGATCCAGCCAGTCCCAGAGCACTATGGTCTCATGG
TTGATTTGCTTGGGCGGTCCGGTCATGTCAGGGAGGCAGTGGATTTCGTCAAGAGCATGCCTGTGGAGCCACACCCAGGC
TTATGGGGTGCACTTGCTGGCGCCTGCAAGATCCATGGCGAGGTGGAGCTCGGTGAGGAGGTTGCCAAGAAGCTCATTGA
GTTGGAGCCTCAGCATGGCAGCCGGTACATCCTCCTGTCAAACATATATGCCACCTCGAACAGATGGGATGACATGGCTA
ATGTGCGCAGGATCCTGAAGGATCGCAAGGTCCCCAAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis