Browse Element(s) Details


Os.50354.1.S1_at

Description gb:AK120845.1
DB_XREF= gi:37990468
TID=Os.50354.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022M20, full insert sequence.
FL= gb:AK058534.1 gb:AK120845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4152011/11Glycosyl transferase family 8 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g41510Os.10172.1.S1_at11/112+24872907..24874063Myb-related protein Myb4, putative, expressed
LOC_Os02g41510OsAffx.7575.1.S1_x_at1/112+24872907..24874063Myb-related protein Myb4, putative, expressed
LOC_Os02g41520Os.50354.1.S1_at11/112+24893654..24899093Glycosyl transferase family 8 protein, expressed
LOC_Os02g41530NANA2+24902226..24902674hypothetical protein
LOC_Os02g41540NANA2+24905642..24906139hypothetical protein
LOC_Os02g41550Os.19289.1.S1_a_at11/112+24909993..24916215Cryptochrome 2 apoprotein, putative, expressed
LOC_Os02g41550Os.48589.1.A1_at8/112+24909993..24916215Cryptochrome 2 apoprotein, putative, expressed
LOC_Os02g41560OsAffx.24669.1.S1_at11/112+24917999..24919480pentatricopeptide, putative
LOC_Os02g41570NANA2+24923935..24924430hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50354.1.S1_at--560--9071Chr02:24898283..24898307 (25 bp)
TGCTTTAATATCTCTTGCCTTTGCC
LOC_Os02g41520
Os.50354.1.S1_at--401--8891Chr02:24898361..24898385 (25 bp)
TGAGTGGACCTCTGTGACGTTCTTC
LOC_Os02g41520
Os.50354.1.S1_at--1072--10551Chr02:24898380..24898404 (25 bp)
TTCTTCTTGTTGTTCGGGAGCTACC
LOC_Os02g41520
Os.50354.1.S1_at--119--2271Chr02:24898475..24898569 (25 bp)
AAATCATGCTGGTGCAGGACTTCAG
LOC_Os02g41520
Os.50354.1.S1_at--914--8091Chr02:24898561..24898585 (25 bp)
GGACTTCAGCGGAATACGTCGGACT
LOC_Os02g41520
Os.50354.1.S1_at--600--6331Chr02:24898594..24898618 (25 bp)
GATGCAGCTTTCTATTGGTCAGGGA
LOC_Os02g41520
Os.50354.1.S1_at--701--9271Chr02:24898658..24898682 (25 bp)
TCCTGGGAATAACTGCTCTTTTTGC
LOC_Os02g41520
Os.50354.1.S1_at--482--3551Chr02:24898882..24898906 (25 bp)
CATACGCTTCGGAGCATCTAGCTAT
LOC_Os02g41520
Os.50354.1.S1_at--446--451Chr02:24898897..24898921 (25 bp)
ATCTAGCTATCTCGGCCTTTGTCAA
LOC_Os02g41520
Os.50354.1.S1_at--962--10051Chr02:24898971..24898995 (25 bp)
TAGTCATTCTTTGACCGCGGCAATT
LOC_Os02g41520
Os.50354.1.S1_at--498--7411Chr02:24899007..24899031 (25 bp)
GTGTCCGAAATGTGCCTGTTGTAAT
LOC_Os02g41520
Target Sequence 
TGCTTTAATATCTCTTGCCTTTGCCTTTATTATTATTCCACGGCAAGTGATGCCATGGACGGGTTTGCTGCTGATGTNTG
AGTGGACCTCTGTGACGTTCTTCTTGTTGTTCGGGAGCTACCTCCGNGTTGTATACAATTGGGGAAGTTCTAGTGCAAAT
CATGTCGGGCATAACAATTTAGATTCATCAGAAAATCATGCTGGTGCAGGACTTCAGCGGAATACGTCGGACTGTGACAC
AGATGCAGCTTTCTATTGGTCAGGGATGGCTATACTATCTAGTATAGCATTATTATCACCAACAGTCCTGGGAATAACTG
CTCTTTTTGCAAAGCTTGGGTTGATGGTAGCAGGTGGCGTGGTGTTGGCATCGTTTATGACATACGCTTCGGAGCATCTA
GCTATCTCGGCCTTTGTCAAAGGCCAAAGAGATAGGAACGCCTCGAGAGGTAGCATTTGTTTTATGTGCTAGTCATTCTT
TGACCGCGGCAATTTCTTTCACCTTGTGTCCGAAATGTGCCTGTTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis