Browse Element(s) Details


Os.10172.1.S1_at

Description gb:AK112056.1
DB_XREF= gi:37988719
TID=Os.10172.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-C03, full insert sequence.
FL= gb:AK112056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4151011/11Myb-related protein Myb4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g41470Os.6575.1.S1_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470Os.6575.1.S1_s_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470Os.22603.1.A1_a_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470OsAffx.25238.1.S1_at1/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41480Os.49789.1.S1_at11/112+24856334..24858930Protein kinase domain containing protein, expressed
LOC_Os02g41490OsAffx.24668.1.S1_at11/112+24860902..24861906hypothetical protein
LOC_Os02g41500OsAffx.12439.1.S1_at11/112+24865877..24868342Calcium binding EGF domain containing protein, expressed
LOC_Os02g41500OsAffx.21755.1.S1_x_at1/112+24865877..24868342Calcium binding EGF domain containing protein, expressed
LOC_Os02g41510Os.10172.1.S1_at11/112+24872907..24874063Myb-related protein Myb4, putative, expressed
LOC_Os02g41510OsAffx.7575.1.S1_x_at1/112+24872907..24874063Myb-related protein Myb4, putative, expressed
LOC_Os02g41520Os.50354.1.S1_at11/112+24893654..24899093Glycosyl transferase family 8 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10172.1.S1_at--601--4671Chr02:24873265..24873289 (25 bp)
GCGGATCACAACACCACGGACAGTT
LOC_Os02g41510
Os.10172.1.S1_at--491--4351Chr02:24873252..24873276 (25 bp)
CCACGGACAGTTTCACCTCGGAGGA
LOC_Os02g41510
Os.10172.1.S1_at--110--8531Chr02:24873177..24873201 (25 bp)
TGGACAGCACCGACTCCGGGATGGA
LOC_Os02g41510
Os.10172.1.S1_at--932--831Chr02:24873088..24873112 (25 bp)
ATGGACGACTTCTGGCTCAAGCTGT
LOC_Os02g41510
Os.10172.1.S1_at--1135--9711Chr02:24873072..24873096 (25 bp)
TCAAGCTGTTCATCCAGGCCGGTGG
LOC_Os02g41510
Os.10172.1.S1_at--473--4991Chr02:24873048..24873072 (25 bp)
GCATGCAGAATTTGCCCCAGATTTA
LOC_Os02g41510
Os.10172.1.S1_at--427--1471Chr02:24873013..24873037 (25 bp)
AGAATTGGCCTCTTGGGTCGATCTC
LOC_Os02g41510
Os.10172.1.S1_at--1146--10831Chr02:24873001..24873025 (25 bp)
TTGGGTCGATCTCTTGTTCATTTTT
LOC_Os02g41510
Os.10172.1.S1_at--657--8791Chr02:24872987..24873011 (25 bp)
TGTTCATTTTTCTTACCACCACTAT
LOC_Os02g41510
Os.10172.1.S1_at--766--3651Chr02:24872976..24873000 (25 bp)
CTTACCACCACTATTCTTTGAATCT
LOC_Os02g41510
Os.10172.1.S1_at--809--5231Chr02:24872957..24872981 (25 bp)
GAATCTTTGGAGCTGTGTAAATCTT
LOC_Os02g41510
Target Sequence 
GCGGATCACAACACCACGGACAGTTTCACCTCGGAGGAGGAGTTCCAGATCGACGACAGCTTCTGGTCGGAGACGCTGGC
AATGACGGTGGACAGCACCGACTCCGGGATGGAGATGAGCGGCGGCGATCCTCTCGGCGCGGGCGGTGCCTCGCCGTCGT
CGAGCAACGACGACGACATGGACGACTTCTGGCTCAAGCTGTTCATCCAGGCCGGTGGCATGCAGAATTTGCCCCAGATT
TAATTTAGGCAGAGAATTGGCCTCTTGGGTCGATCTCTTGTTCATTTTTCTTACCACCACTATTCTTTGAATCTTTGGAG
CTGTGTAAATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis