Browse Element(s) Details


Os.22603.1.A1_a_at

Description gb:CA753757
DB_XREF= gi:25797796
DB_XREF=BR040001000_PLATE_G04_31_034.ab1
CLONE=BR040001000_PLATE_G04_31_034.ab1
TID=Os.22603.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.22603 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_187958.1 (A.thaliana) lysyl-tRNA synthetase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4147011/11Lysyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g41460NANA2+24824827..24826182expressed protein
LOC_Os02g41470Os.6575.1.S1_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470Os.6575.1.S1_s_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470Os.22603.1.A1_a_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470OsAffx.25238.1.S1_at1/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41480Os.49789.1.S1_at11/112+24856334..24858930Protein kinase domain containing protein, expressed
LOC_Os02g41490OsAffx.24668.1.S1_at11/112+24860902..24861906hypothetical protein
LOC_Os02g41500OsAffx.12439.1.S1_at11/112+24865877..24868342Calcium binding EGF domain containing protein, expressed
LOC_Os02g41500OsAffx.21755.1.S1_x_at1/112+24865877..24868342Calcium binding EGF domain containing protein, expressed
LOC_Os02g41510Os.10172.1.S1_at11/112+24872907..24874063Myb-related protein Myb4, putative, expressed
LOC_Os02g41510OsAffx.7575.1.S1_x_at1/112+24872907..24874063Myb-related protein Myb4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006430biological_processlysyl-tRNA aminoacylation
GO:0005737cellular_componentcytoplasm
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0004824molecular_functionlysine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22603.1.A1_a_at--697--1251Chr02:24842648..24842672 (25 bp)
AGATACAGAGTAGGCAACACATGGG
LOC_Os02g41470
Os.22603.1.A1_a_at--212--7451Chr02:24842623..24842647 (25 bp)
GTGTGGAAGAAGTGCTCTGCACCCT
LOC_Os02g41470
Os.22603.1.A1_a_at--597--9091Chr02:24842611..24842635 (25 bp)
TGCTCTGCACCCTTGCTTGTATTGT
LOC_Os02g41470
Os.22603.1.A1_a_at--409--3851Chr02:24842607..24842631 (25 bp)
CTGCACCCTTGCTTGTATTGTTAAT
LOC_Os02g41470
Os.22603.1.A1_a_at--497--5091Chr02:24842605..24842629 (25 bp)
GCACCCTTGCTTGTATTGTTAATTT
LOC_Os02g41470
Os.22603.1.A1_a_at--294--1531Chr02:24842578..24842602 (25 bp)
AGCAGATTTTACATGCGATCATTTT
LOC_Os02g41470
Os.22603.1.A1_a_at--4--6551Chr02:24842574..24842598 (25 bp)
GATTTTACATGCGATCATTTTTGTT
LOC_Os02g41470
Os.22603.1.A1_a_at--217--2111Chr02:24842568..24842592 (25 bp)
ACATGCGATCATTTTTGTTAGATTG
LOC_Os02g41470
Os.22603.1.A1_a_at--568--4611Chr02:24842564..24842588 (25 bp)
GCGATCATTTTTGTTAGATTGTTTT
LOC_Os02g41470
Os.22603.1.A1_a_at--968--6591Chr02:24842548..24842572 (25 bp)
GATTGTTTTACAGATAGCTCTACCA
LOC_Os02g41470
Os.22603.1.A1_a_at--1080--10791Chr02:24842546..24842570 (25 bp)
TTGTTTTACAGATAGCTCTACCATT
LOC_Os02g41470
Target Sequence 
AGATACAGAGTAGGCAACACATGGGGTGTGGAAGAAGTGCTCTGCACCCTTGCTTGTATTGTTAATTTNNAGCAGATTTT
ACATGCGATCATTTTTGTTAGATTGTTTTACAGATAGCTCTACCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22603.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis