Browse Element(s) Details


OsAffx.24668.1.S1_at

Description tigr:9630.m03962
TID=OsAffx.24668.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4149011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g41470Os.6575.1.S1_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470Os.6575.1.S1_s_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470Os.22603.1.A1_a_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470OsAffx.25238.1.S1_at1/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41480Os.49789.1.S1_at11/112+24856334..24858930Protein kinase domain containing protein, expressed
LOC_Os02g41490OsAffx.24668.1.S1_at11/112+24860902..24861906hypothetical protein
LOC_Os02g41500OsAffx.12439.1.S1_at11/112+24865877..24868342Calcium binding EGF domain containing protein, expressed
LOC_Os02g41500OsAffx.21755.1.S1_x_at1/112+24865877..24868342Calcium binding EGF domain containing protein, expressed
LOC_Os02g41510Os.10172.1.S1_at11/112+24872907..24874063Myb-related protein Myb4, putative, expressed
LOC_Os02g41510OsAffx.7575.1.S1_x_at1/112+24872907..24874063Myb-related protein Myb4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24668.1.S1_at--1025--8991Chr02:24861748..24861772 (25 bp)
TGAATGGCTCCTCAGTTCACTCAGT
LOC_Os02g41490
OsAffx.24668.1.S1_at--850--6751Chr02:24861734..24861758 (25 bp)
GTTCACTCAGTGGAAGGGCTCTCCT
LOC_Os02g41490
OsAffx.24668.1.S1_at--1000--2871Chr02:24861721..24861745 (25 bp)
AAGGGCTCTCCTTGTGCAGGCACAA
LOC_Os02g41490
OsAffx.24668.1.S1_at--286--7211Chr02:24861546..24861570 (25 bp)
GTCGTCTTCGGAGACACCGCAGTGG
LOC_Os02g41490
OsAffx.24668.1.S1_at--693--4151Chr02:24861458..24861482 (25 bp)
CGCCCGCCACCGTTAGAGAGAGATG
LOC_Os02g41490
OsAffx.24668.1.S1_at--846--3171Chr02:24861050..24861074 (25 bp)
AATTGGATCAAGTCAGGGCCGTGGA
LOC_Os02g41490
OsAffx.24668.1.S1_at--886--4491Chr02:24861033..24861057 (25 bp)
GCCGTGGATTGGCTTGCAGATCCAA
LOC_Os02g41490
OsAffx.24668.1.S1_at--847--5031Chr02:24861018..24861042 (25 bp)
GCAGATCCAAGTTGGGCCGTCGACA
LOC_Os02g41490
OsAffx.24668.1.S1_at--1036--3531Chr02:24860993..24861017 (25 bp)
CATCGCCCAGGGAAGTCGGGCTGTT
LOC_Os02g41490
OsAffx.24668.1.S1_at--69--6211Chr02:24860947..24860971 (25 bp)
GAGGCAGCCCAAATTGGACAGCAGC
LOC_Os02g41490
OsAffx.24668.1.S1_at--1054--8131Chr02:24860932..24860956 (25 bp)
GGACAGCAGCGATCCAATCTGGACC
LOC_Os02g41490
Target Sequence 
TGAATGGCTCCTCAGTTCACTCAGTGGAAGGGCTCTCCTTGTGCAGGCACAACGCCTCCCTCTTCTCTCTCTCTCTCTCT
CGTCAACGCAGCCGGAGCCGGAGGCGACGTGCGGCGGTCAAGCGATGAGGGTCGGCGCGCGGCGGCCAGCCGAGGAGGAC
AGGCCGGACGCGAGTTCTGGGCAGAGCGTCGTCGTCGTCGTCGTCGTCTTCGGAGACACCGCAGTGGTCGTCGTCGTGCT
CCACCCGTCGCTCGCCGCCGCTCTACCCACCTCCTGCCGCCTCTCTATGCCGCCCGCCACCGTTAGAGAGAGATGGGGGA
TAGAGAGAGGAGGAAGGAGGGAGGATGGAGTGAAGGGGGACGAAAACCAGTCTGGGCGACAAATAGAGGGACCCGAAGTG
AACTTATTCCCCCATAAAAACAATGGAGAATTGGATCAAGTCAGGGCCGTGGATTGGCTTGCAGATCCAAGTTGGGCCGT
CGACACATCGCCCAGGGAAGTCGGGCTGTTCCTTCCCCTAACGGGCCTGAAGAGGCAGCCCAAATTGGACAGCAGCGATC
CAATCTGGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis