Browse Element(s) Details


Os.49789.1.S1_at

Description gb:AK111596.1
DB_XREF= gi:37988259
TID=Os.49789.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49789 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093N17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093N17, full insert sequence.
FL= gb:AK111596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4148011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g41470Os.6575.1.S1_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470Os.6575.1.S1_s_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470Os.22603.1.A1_a_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470OsAffx.25238.1.S1_at1/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41480Os.49789.1.S1_at11/112+24856334..24858930Protein kinase domain containing protein, expressed
LOC_Os02g41490OsAffx.24668.1.S1_at11/112+24860902..24861906hypothetical protein
LOC_Os02g41500OsAffx.12439.1.S1_at11/112+24865877..24868342Calcium binding EGF domain containing protein, expressed
LOC_Os02g41500OsAffx.21755.1.S1_x_at1/112+24865877..24868342Calcium binding EGF domain containing protein, expressed
LOC_Os02g41510Os.10172.1.S1_at11/112+24872907..24874063Myb-related protein Myb4, putative, expressed
LOC_Os02g41510OsAffx.7575.1.S1_x_at1/112+24872907..24874063Myb-related protein Myb4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49789.1.S1_at--770--8111Chr02:24856909..24856933 (25 bp)
GGACGTGCAGGCTCACCGACAAGAG
LOC_Os02g41480
Os.49789.1.S1_at--528--971Chr02:24856807..24856831 (25 bp)
AGGAGAAGTACCTCTCGTCGCAGTT
LOC_Os02g41480
Os.49789.1.S1_at--942--4611Chr02:24856753..24856777 (25 bp)
GCGAGATCCTGGACCCGCAGATCAA
LOC_Os02g41480
Os.49789.1.S1_at--261--5391Chr02:24856683..24856707 (25 bp)
GAAGCAGTGCCTGGAGATCTCCGGC
LOC_Os02g41480
Os.49789.1.S1_at--269--5011Chr02:24856537..24856561 (25 bp)
GCATGGCTGCTGACTCTGATCAGAT
LOC_Os02g41480
Os.49789.1.S1_at--280--6591Chr02:24856515..24856539 (25 bp)
GATTGAACTTAGCACTAGCACTAGA
LOC_Os02g41480
Os.49789.1.S1_at--532--2051Chr02:24856489..24856513 (25 bp)
ACATTAGTTTCAGTGATACGGCGTA
LOC_Os02g41480
Os.49789.1.S1_at--737--6871Chr02:24856467..24856491 (25 bp)
GTATATTGGGATCCGATCTCCACGC
LOC_Os02g41480
Os.49789.1.S1_at--628--1831Chr02:24856446..24856470 (25 bp)
ACGCTGACTGCACGTTTTTGCGAGA
LOC_Os02g41480
Os.49789.1.S1_at--870--10731Chr02:24856408..24856432 (25 bp)
TTGCAGCGATTTTCAGCCACTAGGC
LOC_Os02g41480
Os.49789.1.S1_at--54--1691Chr02:24856394..24856418 (25 bp)
AGCCACTAGGCAACTTTAACTTAGA
LOC_Os02g41480
Target Sequence 
GGACGTGCAGGCTCACCGACAAGAGCGACGTGTACAGCTTCGGCGTCGTGCTGCTGGAGCTCCTCACCTGCCGGAAGGCG
CTCAACCTGGAGGAGCTGGAGGAGGAGAAGTACCTCTCGTCGCAGTTCCTCCTGGCCGTCGGAGAGGGCCGGCTCGGCGA
GATCCTGGACCCGCAGATCAAGGGCGAGCAGAGCATGGAGGTGCTCGAGCAGGTCGCCGAGCTGGCGAAGCAGTGCCTGG
AGATCTCCGGCGAGAAGAGGCCGTCGATGCGGGAGGTCGCGGAGGAGCTCGACAGGCTGGGGAAGCTGTCGCTGCACCCA
TGGGGGCAGCCCAACTCCGGCGAGCTAGCGGCATTGCTCGGTGGATCACCGAGCATGGCTGCTGACTCTGATCAGATTGA
ACTTAGCACTAGCACTAGAAACATTAGTTTCAGTGATACGGCGTATATTGGGATCCGATCTCCACGCTGACTGCACGTTT
TTGCGAGAGATAGTTGCAGGCTTGCAGCGATTTTCAGCCACTAGGCAACTTTAACTTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis