Browse Element(s) Details


Os.19289.1.S1_a_at

Description gb:AB103094.1
DB_XREF= gi:28372346
GEN=OsCRY2
TID=Os.19289.1
CNT=43
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.19289 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsCRY2 mRNA for cryptochrome 2, complete cds.
PROD=cryptochrome 2
FL= gb:AK099334.1 gb:AB103094.1 gb:AK065669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4155011/11Cryptochrome 2 apoprotein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g41520Os.50354.1.S1_at11/112+24893654..24899093Glycosyl transferase family 8 protein, expressed
LOC_Os02g41530NANA2+24902226..24902674hypothetical protein
LOC_Os02g41540NANA2+24905642..24906139hypothetical protein
LOC_Os02g41550Os.19289.1.S1_a_at11/112+24909993..24916215Cryptochrome 2 apoprotein, putative, expressed
LOC_Os02g41550Os.48589.1.A1_at8/112+24909993..24916215Cryptochrome 2 apoprotein, putative, expressed
LOC_Os02g41560OsAffx.24669.1.S1_at11/112+24917999..24919480pentatricopeptide, putative
LOC_Os02g41570NANA2+24923935..24924430hypothetical protein
LOC_Os02g41580OsAffx.12442.1.S1_at11/112+24929110..24930599Protein kinase domain containing protein, expressed
LOC_Os02g41590Os.6634.1.S1_at11/112+24934935..24940779Adenosine kinase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006281biological_processDNA repair
GO:0006290biological_processpyrimidine dimer repair
GO:0009411biological_processresponse to UV
GO:0009414biological_processresponse to water deprivation
GO:0009637biological_processresponse to blue light
GO:0009638biological_processphototropism
GO:0009640biological_processphotomorphogenesis
GO:0009785biological_processblue light signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0010118biological_processstomatal movement
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0005634cellular_componentnucleus
GO:0003913molecular_functionDNA photolyase activity
GO:0003914molecular_functionDNA (6-4) photolyase activity
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0009882molecular_functionblue light photoreceptor activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19289.1.S1_a_at--929--7611Chr02:24914787..24914811 (25 bp)
GGGAAACATCTCCATGTGCTTTGCC
LOC_Os02g41550
Os.19289.1.S1_a_at--330--4551Chr02:24914809..24914833 (25 bp)
GCCCATTGATCAAAGAGTGCCCCAT
LOC_Os02g41550
Os.19289.1.S1_a_at--654--6111Chr02:24914823..24914847 (25 bp)
GAGTGCCCCATGCTAGCAGCAAGGA
LOC_Os02g41550
Os.19289.1.S1_a_at--926--5371Chr02:24914927..24914951 (25 bp)
GAAGCAACGAGCTCTGTAGCAAACT
LOC_Os02g41550
Os.19289.1.S1_a_at--262--6951Chr02:24914942..24914966 (25 bp)
GTAGCAAACTCACCGGTATCAAGGA
LOC_Os02g41550
Os.19289.1.S1_a_at--905--2431Chr02:24914966..24914990 (25 bp)
AAAAGATCCTTTTGTGAGACTGCAT
LOC_Os02g41550
Os.19289.1.S1_a_at--660--5991Chr02:24914981..24915005 (25 bp)
GAGACTGCATTTCATGTCCCATCTT
LOC_Os02g41550
Os.19289.1.S1_a_at--115--7251Chr02:24914996..24915020 (25 bp)
GTCCCATCTTATTCATCTTCAGCTG
LOC_Os02g41550
Os.19289.1.S1_a_at--271--9571Chr02:24915011..24915035 (25 bp)
TCTTCAGCTGAAGTGCATTCGCATA
LOC_Os02g41550
Os.19289.1.S1_a_at--716--9611Chr02:24915043..24915067 (25 bp)
TCATGGTGGTTCCTTAGTTGGGCCT
LOC_Os02g41550
Os.19289.1.S1_a_at--506--10451Chr02:24915056..24915080 (25 bp)
TTAGTTGGGCCTTCAAGATATCTCC
LOC_Os02g41550
Target Sequence 
GGGAAACATCTCCATGTGCTTTGCCCATTGATCAAAGAGTGCCCCATGCTAGCAGCAAGGATCATAATTTAAAGTCAAAG
GTATTGAAGGCCTCAAATAGAAGTTCTATTTGTGTTGATATGATCAGGTCCTCAAAGATGGAAGCAACGAGCTCTGTAGC
AAACTCACCGGTATCAAGGAAAAGATCCTTTTGTGAGACTGCATTTCATGTCCCATCTTATTCATCTTCAGCTGAAGTGC
ATTCGCATATTCAAGATCATGGTGGTTCCTTAGTTGGGCCTTCAAGATATCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19289.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis