Browse Element(s) Details


Os.25734.2.S1_a_at

Description gb:AK064039.1
DB_XREF= gi:32974057
TID=Os.25734.2
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25734 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-C11, full insert sequence.
FL= gb:AK064039.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3417011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34130OsAffx.26319.1.S1_at11/114+20500825..20501776hypothetical protein
LOC_Os04g34140Os.9877.1.S1_at11/114+20503478..20505235U-box domain containing protein, expressed
LOC_Os04g34150OsAffx.14125.1.S1_at11/114+20511553..20511906hypothetical protein
LOC_Os04g34160OsAffx.3993.1.S1_at11/114+20515104..20516460hypothetical protein
LOC_Os04g34160OsAffx.25067.1.S1_at1/114+20515104..20516460hypothetical protein
LOC_Os04g34170Os.25734.2.S1_a_at11/114+20520646..20522441transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g34180OsAffx.14126.1.S1_at10/114+20525809..20529890hypothetical protein
LOC_Os04g34190NANA4+20530951..20535317retrotransposon protein, putative, unclassified
LOC_Os04g34200OsAffx.14127.1.S1_at9/114+20536849..20537760hypothetical protein
LOC_Os04g34200OsAffx.14127.1.S1_x_at9/114+20536849..20537760hypothetical protein
LOC_Os04g34209NANA4+20539184..20539763NA
LOC_Os04g34220NANA4+20541428..20542663hypothetical protein
LOC_Os04g34230OsAffx.14129.1.S1_at11/114+20545911..20548551Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25734.2.S1_a_at--571--3731Chr04:20521800..20521824 (25 bp)
CTACTAGTTGTGTTCCGCCACTCTC
LOC_Os04g34170
Os.25734.2.S1_a_at--865--971Chr04:20522100..20522124 (25 bp)
AGGAGGTGACCGACCGACCAGAGTT
LOC_Os04g34170
Os.25734.2.S1_a_at--185--4231Chr04:20522113..20522137 (25 bp)
CCGACCAGAGTTGTGCGAGAGGCCA
LOC_Os04g34170
Os.25734.2.S1_a_at--951--4611Chr04:20522127..20522151 (25 bp)
GCGAGAGGCCAAAGAGGCTCTTCCT
LOC_Os04g34170
Os.25734.2.S1_a_at--678--2331Chr04:20522137..20522161 (25 bp)
AAAGAGGCTCTTCCTTCCGTGAAGA
LOC_Os04g34170
Os.25734.2.S1_a_at--326--9251Chr04:20522148..20522172 (25 bp)
TCCTTCCGTGAAGATTGCTGTGCAT
LOC_Os04g34170
Os.25734.2.S1_a_at--606--71Chr04:20522161..20522185 (25 bp)
ATTGCTGTGCATGCCGAGCTGCGCT
LOC_Os04g34170
Os.25734.2.S1_a_at--878--9171Chr04:20522172..20522196 (25 bp)
TGCCGAGCTGCGCTGCCTTTAATTA
LOC_Os04g34170
Os.25734.2.S1_a_at--567--4991Chr04:20522244..20522268 (25 bp)
GCATGCTTGAGTGCCAATGTTGCTA
LOC_Os04g34170
Os.25734.2.S1_a_at--1008--6091Chr04:20522252..20522276 (25 bp)
GAGTGCCAATGTTGCTAGCTCGCTC
LOC_Os04g34170
Os.25734.2.S1_a_at--344--851Chr04:20522409..20522433 (25 bp)
ATGGAAGTAAAAGCTGTTTTCGATC
LOC_Os04g34170
Target Sequence 
CTACTAGTTGTGTTCCGCCACTCTCCGTCACGTTCCGACCAAAGGAGGTGACCGACCGACCAGAGTTGTGCGAGAGGCCA
AAGAGGCTCTTCCTTCCGTGAAGATTGCTGTGCATGCCGAGCTGCGCTGCCTTTAATTACCTATAGCTAATTAATTAGCT
AGGGCCAATGTTGCGAGGAGAATAATGCATGCTTGAGTGCCAATGTTGCTAGCTCGCTCCCTCTCTAGATGTGATGTGTA
TCATGTGTTGTGTGTTGCTCGAATTTGTACTGTCTAGCGTACGTCGATCCCGTGGTGATTTGTGGAGTATGGTATTGTTG
TGTTACGGTATAACCAAAAATAACAGCGGAAATGGAAGTAAAAGCTGTTTTCGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25734.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis