Browse Element(s) Details


Os.2580.1.S1_at

Description gb:AK121929.1
DB_XREF= gi:37991552
TID=Os.2580.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2580 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0094K03.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106J23, full insert sequence.
FL= gb:AK121929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3335011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33330OsAffx.6849.1.S1_at11/1110+17190606..17192021hypothetical protein
LOC_Os10g33330OsAffx.6849.1.S1_x_at11/1110+17190606..17192021hypothetical protein
LOC_Os10g33350Os.2580.1.S1_at11/1110+17215351..17218290expressed protein
LOC_Os10g33360NANA10+17218571..17218870hypothetical protein
LOC_Os10g33370Os.10251.1.S1_at11/1110+17234777..17242065beta-ketoacyl-CoA synthase family protein, putative, expressed
LOC_Os10g33390OsAffx.30651.1.S1_at11/1110+17242773..17244371hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2580.1.S1_at--615--8531Chr10:17217558..17217582 (25 bp)
TGGAGCTGCCCAATGAGGTGATGAA
LOC_Os10g33350
Os.2580.1.S1_at--429--1051Chr10:17217573..17217597 (25 bp)
AGGTGATGAACAGCCCGATCGGCGC
LOC_Os10g33350
Os.2580.1.S1_at--461--491Chr10:17217590..17217747 (25 bp)
ATCGGCGCGCTCATATTGCCGATGA
LOC_Os10g33350
Os.2580.1.S1_at--190--2711Chr10:17217764..17217788 (25 bp)
AAGCTTGCGAGCTGGAGTTGCTCCT
LOC_Os10g33350
Os.2580.1.S1_at--569--5791Chr10:17217833..17217857 (25 bp)
GACGCAGTCACCACCATCGGGTAGC
LOC_Os10g33350
Os.2580.1.S1_at--1040--491Chr10:17217848..17217872 (25 bp)
ATCGGGTAGCATCCATGTCGAGCCG
LOC_Os10g33350
Os.2580.1.S1_at--1012--2231Chr10:17217873..17217897 (25 bp)
AAATCGACCGCCTCCGACAAGACGG
LOC_Os10g33350
Os.2580.1.S1_at--818--631Chr10:17218176..17218200 (25 bp)
ATGCAGCGAGGGTAGAACGGTCACA
LOC_Os10g33350
Os.2580.1.S1_at--41--10031Chr10:17218188..17218212 (25 bp)
TAGAACGGTCACATTTGCACCCACA
LOC_Os10g33350
Os.2580.1.S1_at--728--5091Chr10:17218204..17218228 (25 bp)
GCACCCACACGAGCATGTTCAATTG
LOC_Os10g33350
Os.2580.1.S1_at--1002--5491Chr10:17218246..17218270 (25 bp)
GAACAGGGAAGCTCATTGCGTAAAT
LOC_Os10g33350
Target Sequence 
TGGAGCTGCCCAATGAGGTGATGAACAGCCCGATCGGCGCGCTCATATTGCCGATGATTCAGGGGTTGGAGACAAGCTTG
CGAGCTGGAGTTGCTCCTCAGCCGCCGCAATTCAAGCCTTCTCCGGTGGCGGCAGTGACGGCGACGCAGTCACCACCATC
GGGTAGCATCCATGTCGAGCCGAAATCGACCGCCTCCGACAAGACGGAGGTTGACAACAACGGCGGCGGGATTCCGCCGG
CGGTACAACCTGCTCCGGTGGCGGCGGCGACGTCACCAGCAGCAGTAGCCGAGGCGAGCATGGCGCCGCCGCCTCCGGTG
GATCCGCTCCGGGAGGCGAAGAGCCGGGTGCAGGAGGAGATAAAGAGGGAGTTCGCGGCGATCATGGCGACGGGCGCCGT
ACAGGCCGGCGAGGCGGCGGCGCTCGCGACGAGGAGGGTCATGGAGCGGCACGGGCTGCGTNNCGCCGCCGTCGCCGGCG
GCGGCATGCAGCGAGGGTAGAACGGTCACATTTGCACCCACACGAGCATGTTCAATTGTATATATATACGTGCAAGAACA
GGGAAGCTCATTGCGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis