Browse Element(s) Details


OsAffx.6849.1.S1_x_at

Description tigr:9638.m02913
TID=OsAffx.6849.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3333011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33304NANA10+17164076..17166851hypothetical protein
LOC_Os10g33310Os.51882.1.S1_at11/1110+17170254..17173783Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os10g33310Os.17475.1.S1_at9/1110+17170254..17173783Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os10g33330OsAffx.6849.1.S1_at11/1110+17190606..17192021hypothetical protein
LOC_Os10g33330OsAffx.6849.1.S1_x_at11/1110+17190606..17192021hypothetical protein
LOC_Os10g33350Os.2580.1.S1_at11/1110+17215351..17218290expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6849.1.S1_x_at--642--1712Chr07:29128558..29128826 (25 bp)
ACCACCGCCGGTGGCATGAATCTTT
NONE
OsAffx.6849.1.S1_x_at--976--8491Chr10:17190803..17190827 (25 bp)
TGGCATGAATCTTTCCTACCACTGA
LOC_Os10g33330
OsAffx.6849.1.S1_x_at--518--5251Chr10:17190797..17190821 (25 bp)
GAATCTTTCCTACCACTGAGTGAGC
LOC_Os10g33330
OsAffx.6849.1.S1_x_at--160--9991Chr10:17190787..17190811 (25 bp)
TACCACTGAGTGAGCTCGCCGGCTC
LOC_Os10g33330
OsAffx.6849.1.S1_x_at--1140--9391Chr10:17190745..17190769 (25 bp)
TCGTCCACTCGTACACCAAGGTGGT
LOC_Os10g33330
OsAffx.6849.1.S1_x_at--770--2891Chr10:17190728..17190752 (25 bp)
AAGGTGGTCAGCAGCTTCGCCGCGA
LOC_Os10g33330
OsAffx.6849.1.S1_x_at--863--1931Chr10:17190694..17190718 (25 bp)
ACGGCAAGCTCGACGTGGTGTCCAA
LOC_Os10g33330
OsAffx.6849.1.S1_x_at--271--7711Chr10:17190678..17190702 (25 bp)
GGTGTCCAAGAAGCATCCAGACCGT
LOC_Os10g33330
OsAffx.6849.1.S1_x_at--800--11Chr10:17190664..17190688 (25 bp)
ATCCAGACCGTAGAATGCGGGCCTC
LOC_Os10g33330
OsAffx.6849.1.S1_x_at--75--1391Chr10:17190660..17190684 (25 bp)
AGACCGTAGAATGCGGGCCTCCAGC
LOC_Os10g33330
OsAffx.6849.1.S1_x_at--469--1471Chr10:17190653..17190677 (25 bp)
AGAATGCGGGCCTCCAGCATCACCG
LOC_Os10g33330
Target Sequence 
ACCACCGCCGGTGGCATGAATCTTTCCTACCACTGAGTGAGCTCGCCGGCTCCGACGATGAGCCACGCCTCGTCCACTCG
TACACCAAGGTGGTCAGCAGCTTCGCCGCGAGGCTCACCGACGGCAAGCTCGACGTGGTGTCCAAGAAGCATCCAGACCG
TAGAATGCGGGCCTCCAGCATCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6849.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis