Browse Element(s) Details


Os.51882.1.S1_at

Description gb:AK064173.1
DB_XREF= gi:32974191
TID=Os.51882.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51882 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-A07, full insert sequence.
FL= gb:AK064173.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3331011/11Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os01g377401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33270Os.54423.1.A1_x_at10/1110+17142228..17145456Cyanate hydratase, putative, expressed
LOC_Os10g33270Os.2500.1.S1_at8/1110+17142228..17145456Cyanate hydratase, putative, expressed
LOC_Os10g33290Os.26837.1.S1_at11/1110+17155334..17161415TPR Domain containing protein, expressed
LOC_Os10g33290Os.26837.1.S2_at10/1110+17155334..17161415TPR Domain containing protein, expressed
LOC_Os10g33300Os.37083.2.S1_at1/1110+17162479..17162805retrotransposon protein, putative, unclassified
LOC_Os10g33304NANA10+17164076..17166851hypothetical protein
LOC_Os10g33310Os.51882.1.S1_at11/1110+17170254..17173783Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os10g33310Os.17475.1.S1_at9/1110+17170254..17173783Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os10g33330OsAffx.6849.1.S1_at11/1110+17190606..17192021hypothetical protein
LOC_Os10g33330OsAffx.6849.1.S1_x_at11/1110+17190606..17192021hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007050biological_processcell cycle arrest
GO:0042023biological_processDNA endoreduplication
GO:0045736biological_processnegative regulation of cyclin dependent protein kinase activity
GO:0045786biological_processnegative regulation of progression through cell cycle
GO:0005634cellular_componentnucleus
GO:0004861molecular_functioncyclin-dependent protein kinase inhibitor activity
GO:0030332molecular_functioncyclin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51882.1.S1_at--4--9532Chr10:17173318..17173342 (25 bp)
TCTCTCTTCTTATTGTGCGATTCTT
LOC_Os10g33310
Os.51882.1.S1_at--543--10551Chr10:17173193..17173217 (25 bp)
TTCTATCCGGTTTTTCGCATCGGAA
LOC_Os10g33310
Os.51882.1.S1_at--199--4051Chr10:17173144..17173168 (25 bp)
CGATTGTGGCGCTCGGAATTCCTGT
LOC_Os10g33310
Os.51882.1.S1_at--373--10351Chr10:17173069..17173093 (25 bp)
TTTTTTCCATCACACGCGGTTGTAA
LOC_Os10g33310
Os.51882.1.S1_at--596--631Chr10:17173037..17173061 (25 bp)
ATGCTTTCTTGGTGGGATTCTTGTC
LOC_Os10g33310
Os.51882.1.S1_at--533--6571Chr10:17173022..17173046 (25 bp)
GATTCTTGTCCCTTTGCTAATTGAG
LOC_Os10g33310
Os.51882.1.S1_at--1009--5971Chr10:17173000..17173024 (25 bp)
GAGACATGCAATTCGTGCTTTCCTT
LOC_Os10g33310
Os.51882.1.S1_at--169--10631Chr10:17172989..17173013 (25 bp)
TTCGTGCTTTCCTTGTTGCCTAAAT
LOC_Os10g33310
Os.51882.1.S1_at--1013--4372Chr10:17172972..17172996 (25 bp)
GCCTAAATTTGTTCTTTTTCCATGT
LOC_Os10g33310
Os.51882.1.S1_at--616--10291Chr10:17172956..17172980 (25 bp)
TTTCCATGTTTCTTGTGGCGATACA
LOC_Os10g33310
Os.51882.1.S1_at--357--10331Chr10:17172913..17172937 (25 bp)
TTTCTTGTCCCTTAGCTTGTTTACA
LOC_Os10g33310
Target Sequence 
TCTCTCTTCTTATTGTGCGATTCTTTTTTTGTTTTTCGTGGGTTTCTTGGTTGGATTGATTGGGGGAATCGCGTGATTAG
GGTTCAGGGTTTAAGCACCGTACGGGAGTTCTTGGGGTTCGATGTTTCTATCCGGTTTTTCGCATCGGAAAATTTTGGGG
ATTTTTTTTCGGTGCGATTGTGGCGCTCGGAATTCCTGTGGCCAGTTTTGGGGTTTCGAAAGTATCGAAATGGAGGCGAG
GAATCTTTTTTTTTTCCATCACACGCGGTTGTAAAGCCCCGATGCTTTCTTGGTGGGATTCTTGTCCCTTTGCTAATTGA
GACATGCAATTCGTGCTTTCCTTGTTGCCTAAATTTGTTCTTTTTCCATGTTTCTTGTGGCGATACAGCCTTTTCTTTTT
GCCAATTTCTTGTCCCTTAGCTTGTTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis