Browse Element(s) Details


Os.54423.1.A1_x_at

Description gb:AK105134.1
DB_XREF= gi:32990343
TID=Os.54423.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-A03, full insert sequence.
FL= gb:AK105134.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3327010/11Cyanate hydratase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33250Os.2322.1.S1_at10/1110+17119605..17125465CER1 protein, putative, expressed
LOC_Os10g33250Os.2322.2.S1_at10/1110+17119605..17125465CER1 protein, putative, expressed
LOC_Os10g33260OsAffx.18500.1.S1_at11/1110+17127907..17128922hypothetical protein
LOC_Os10g33270Os.54423.1.A1_x_at10/1110+17142228..17145456Cyanate hydratase, putative, expressed
LOC_Os10g33270Os.2500.1.S1_at8/1110+17142228..17145456Cyanate hydratase, putative, expressed
LOC_Os10g33290Os.26837.1.S1_at11/1110+17155334..17161415TPR Domain containing protein, expressed
LOC_Os10g33290Os.26837.1.S2_at10/1110+17155334..17161415TPR Domain containing protein, expressed
LOC_Os10g33300Os.37083.2.S1_at1/1110+17162479..17162805retrotransposon protein, putative, unclassified
LOC_Os10g33304NANA10+17164076..17166851hypothetical protein
LOC_Os10g33310Os.51882.1.S1_at11/1110+17170254..17173783Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os10g33310Os.17475.1.S1_at9/1110+17170254..17173783Cyclin-dependent kinase inhibitor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009439biological_processcyanate metabolism
GO:0008824molecular_functioncyanate hydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54423.1.A1_x_at--1018--5831Chr10:17142555..17142579 (25 bp)
GACCTCGTCGCGCTCATGATGGAGC
LOC_Os10g33270
Os.54423.1.A1_x_at--235--10171Chr10:17144730..17144754 (25 bp)
TATAGACTTCTACTGTTCGGTTGAC
LOC_Os10g33270
Os.54423.1.A1_x_at--512--1291Chr10:17144778..17144802 (25 bp)
AGATCGCGTGGTGGTCACATTTGAT
LOC_Os10g33270
Os.54423.1.A1_x_at--710--5591Chr10:17144805..17144829 (25 bp)
GAAATATCTTCCTTACAGTGAGCAG
LOC_Os10g33270
Os.54423.1.A1_x_at--1160--251Chr10:17145173..17145197 (25 bp)
ATATGATGTCTAGGCTGACCCGCAA
LOC_Os10g33270
Os.54423.1.A1_x_at--434--10091Chr10:17145183..17145207 (25 bp)
TAGGCTGACCCGCAAGACATCTTGA
LOC_Os10g33270
Os.54423.1.A1_x_at--537--3551NONE
CATCTGCTTCTGCTTGTGAATTGAA
NONE
Os.54423.1.A1_x_at--1117--5231Chr10:17145266..17145290 (25 bp)
GAATCGAGCATGTTTTTTACTCCCA
LOC_Os10g33270
Os.54423.1.A1_x_at--306--6811Chr10:17145277..17145301 (25 bp)
GTTTTTTACTCCCAATAGTCGATGA
LOC_Os10g33270
Os.54423.1.A1_x_at--378--6031Chr10:17145350..17145374 (25 bp)
GAGATACAGTTCGATGTCACCTTTA
LOC_Os10g33270
Os.54423.1.A1_x_at--362--7111Chr10:17145365..17145389 (25 bp)
GTCACCTTTACTACTTCTATCATTG
LOC_Os10g33270
Target Sequence 
GACCTCGTCGCGCTCATGATGGAGCCGCCGTTCCGCTCCTACCACCCGGACATCGTCCACGAGCCCGCNATCTACAGATT
GAATGAAGCTGTTATGCATTTTGGAGAGAGCATCAAGGAAATTATCAATGAGGANTTTGGTGATGGAATCNTGTCAGCTA
TAGACTTCTACTGTTCGGTTGACAAGGTACAAGGTGCTGATGGAAAAGATCGCGTGGTGGTCACATTTGATGGGAAATAT
CTTCCTTACAGTGAGCAGAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCTGGTGTTGTGG
GAAAAATGATGTATCATCTGCTTCTGCTTGTGAATTGAATAGAATCGAGCATGTTTTTTACTCCCAATAGTCGATGAAAT
AAACATACTTTGTAATGATGTATACATGAATAAATTGTTTAAGCAGAGATACAGTTCGATGTCACCTTTACTACTTCTAT
CATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54423.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis