Browse Element(s) Details


Os.2322.2.S1_at

Description gb:AK121097.1
DB_XREF= gi:37990720
TID=Os.2322.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative CER1 (OSJNBa0079L16.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023068L20, full insert sequence.
FL= gb:AK121097.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3325010/11CER1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33220OsAffx.22940.1.S1_s_at11/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.5.S1_x_at10/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220Os.35344.3.S1_x_at9/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.5.S1_at8/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.2.S1_at8/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220Os.35344.18.S1_x_at7/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.2.S1_s_at6/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.3.S1_x_at6/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.31552.2.S1_at1/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33230Os.2493.2.S1_x_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33230Os.2493.2.S1_s_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33230Os.2493.1.S1_s_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33230Os.2493.1.S2_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33230Os.2493.1.S1_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33240Os.4963.1.S1_at9/1110+17108084..17111500expressed protein
LOC_Os10g33250Os.2322.1.S1_at10/1110+17119605..17125465CER1 protein, putative, expressed
LOC_Os10g33250Os.2322.2.S1_at10/1110+17119605..17125465CER1 protein, putative, expressed
LOC_Os10g33260OsAffx.18500.1.S1_at11/1110+17127907..17128922hypothetical protein
LOC_Os10g33270Os.54423.1.A1_x_at10/1110+17142228..17145456Cyanate hydratase, putative, expressed
LOC_Os10g33270Os.2500.1.S1_at8/1110+17142228..17145456Cyanate hydratase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042335biological_processcuticle biosynthesis
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0009924molecular_functionoctadecanal decarbonylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2322.2.S1_at--325--9971Chr10:17123925..17123949 (25 bp)
TACCTAGTTGTACCATCATTGCTCC
LOC_Os10g33250
Os.2322.2.S1_at--914--711Chr10:17123886..17123910 (25 bp)
ATGATATTACTTTCGTCCCAAACCT
LOC_Os10g33250
Os.2322.2.S1_at--908--10471Chr10:17123777..17123801 (25 bp)
TTAAACCACGGTAATCTTCCAATAG
LOC_Os10g33250
Os.2322.2.S1_at--1046--971Chr10:17123711..17123735 (25 bp)
AGGAGGTGTACTTCGTCAGATGCAA
LOC_Os10g33250
Os.2322.2.S1_at--536--9651Chr10:17123696..17123720 (25 bp)
TCAGATGCAAGTGTCGCGCGTGTCC
LOC_Os10g33250
Os.2322.2.S1_at--187--7451Chr10:17123677..17123701 (25 bp)
GTGTCCGTTCCTCAGGAAACACAGA
LOC_Os10g33250
Os.2322.2.S1_at--637--1331Chr10:17123655..17123679 (25 bp)
AGAGTGTTCCTGTGGCCAGTCGATC
LOC_Os10g33250
Os.2322.2.S1_at--1144--2911Chr10:17123550..17123574 (25 bp)
AAGGACACACGATATTTCATGGACC
LOC_Os10g33250
Os.2322.2.S1_at--642--9351Chr10:17123518..17123542 (25 bp)
TCGAAGTAAGCCGACCGATCGATCG
LOC_Os10g33250
Os.2322.2.S1_at--800--6391Chr10:17123502..17123526 (25 bp)
GATCGATCGCGAGCTAAATTTATGT
LOC_Os10g33250
Os.2322.2.S1_at--221--10431NONE
TTATGTAGCCCATCGGAATCCGTTG
NONE
Target Sequence 
TACCTAGTTGTACCATCATTGCTCCAAACAACCTATTACATGATATTACTTTCGTCCCAAACCTCTAAATGAATATTAAG
ATTTTGGTAGTACAAATTCTTAAAATTTTGAGACAGCCTTGGGATAAATTAAACCACGGTAATCTTCCAATAGAACAAAG
TAAAAAACAAGTCTTTTCCATAAGGACACAAAACAGGAGGTGTACTTCGTCAGATGCAAGTGTCGCGCGTGTCCGTTCCT
CAGGAAACACAGAGTGTTCCTGTGGCCAGTCGATCGCTACTTCAATTCCCTCCTCCTTCAATGCATGCCTGAACAATAAT
TGTAGGCCTAGAGAGTGTGTGAGTTAAGGAATGCAAAGGACACACGATATTTCATGGACCATTGAGGTCGAAGTAAGCCG
ACCGATCGATCGCGAGCTAAATTTATGTAGCCCATCGGAATCCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2322.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis