Browse Element(s) Details


Os.4963.1.S1_at

Description gb:AK070210.1
DB_XREF= gi:32980234
TID=Os.4963.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0079L16.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023046M17, full insert sequence.
FL= gb:AK070210.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g332409/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33210Os.46447.1.S1_at11/1110+17086216..17091424POT family protein, expressed
LOC_Os10g33220OsAffx.22940.1.S1_s_at11/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.5.S1_x_at10/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220Os.35344.3.S1_x_at9/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.5.S1_at8/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.2.S1_at8/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220Os.35344.18.S1_x_at7/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.2.S1_s_at6/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.3.S1_x_at6/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.31552.2.S1_at1/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33230Os.2493.2.S1_x_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33230Os.2493.2.S1_s_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33230Os.2493.1.S1_s_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33230Os.2493.1.S2_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33230Os.2493.1.S1_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33240Os.4963.1.S1_at9/1110+17108084..17111500expressed protein
LOC_Os10g33250Os.2322.1.S1_at10/1110+17119605..17125465CER1 protein, putative, expressed
LOC_Os10g33250Os.2322.2.S1_at10/1110+17119605..17125465CER1 protein, putative, expressed
LOC_Os10g33260OsAffx.18500.1.S1_at11/1110+17127907..17128922hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4963.1.S1_at--938--4791Chr10:17111259..17111283 (25 bp)
GCTCGCCAAGCGACGATGATCATGC
LOC_Os10g33240
Os.4963.1.S1_at--342--9011Chr10:17111281..17111305 (25 bp)
TGCAAAAAAAGCTTCGCGTCGTCCC
LOC_Os10g33240
Os.4963.1.S1_at--1038--5071Chr10:17111327..17111351 (25 bp)
GCAGCCGCGCAGTGTATCCATCGGA
LOC_Os10g33240
Os.4963.1.S1_at--114--4591Chr10:17111333..17111357 (25 bp)
GCGCAGTGTATCCATCGGAGTTGAA
LOC_Os10g33240
Os.4963.1.S1_at--956--1431Chr10:17111357..17111381 (25 bp)
AGAAGACGGTAGCTACACGCCATAC
LOC_Os10g33240
Os.4963.1.S1_at--17--2171Chr10:17111371..17111395 (25 bp)
ACACGCCATACAGCTCTAGATTTTT
LOC_Os10g33240
Os.4963.1.S1_at--795--4811Chr10:17111383..17111407 (25 bp)
GCTCTAGATTTTTGCGATCTTTGCA
LOC_Os10g33240
Os.4963.1.S1_at--396--10491Chr10:17111415..17111439 (25 bp)
TTAAACCTCATAATCTCTCGAACGA
LOC_Os10g33240
Os.4963.1.S1_at--1018--9331Chr10:17111428..17111452 (25 bp)
TCTCTCGAACGAACTGTAAACCCAA
LOC_Os10g33240
Os.4963.1.S1_at--652--7011NONE
GTAAAATTTTTCTGGCACGGATCTG
NONE
Os.4963.1.S1_at--243--9451Chr10:17111477..17111501 (25 bp)
TCTGGCACGGATCTGAAAGTTTCAA
NONE
Target Sequence 
GCTCGCCAAGCGACGATGATCATGCAAAAAAAGCTTCGCGTCGTCCCGTCTCCAAGCTCAGCAATGGCGCAGCCGCGCAG
TGTATCCATCGGAGTTGAAGAAGACGGTAGCTACACGCCATACAGCTCTAGATTTTTGCGATCTTTGCANTCGGAATTAA
ACCTCATAATCTCTCGAACGAACTGTAAACCCAACACAAATACGAATATGTAAAATTTTTCTGGCACGGATCTGAAAGTT
TCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis