Browse Element(s) Details


Os.2322.1.S1_at

Description gb:AF143746.1
DB_XREF= gi:4769011
GEN=CER1
TID=Os.2322.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2322 (NCBI UniGene Cluster)
DEF=Oryza sativa CER1 (CER1) mRNA, complete cds.
PROD=CER1
FL= gb:AK100751.1 gb:AF143746.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3325010/11CER1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33220OsAffx.22940.1.S1_s_at11/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.5.S1_x_at10/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220Os.35344.3.S1_x_at9/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.5.S1_at8/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.2.S1_at8/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220Os.35344.18.S1_x_at7/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.2.S1_s_at6/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.22940.3.S1_x_at6/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33220OsAffx.31552.2.S1_at1/1110+17093442..17100793Transposable element protein, putative, MuDR
LOC_Os10g33230Os.2493.2.S1_x_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33230Os.2493.2.S1_s_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33230Os.2493.1.S1_s_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33230Os.2493.1.S2_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33230Os.2493.1.S1_at11/1110+17101875..17107207RNA recognition motif family protein, expressed
LOC_Os10g33240Os.4963.1.S1_at9/1110+17108084..17111500expressed protein
LOC_Os10g33250Os.2322.1.S1_at10/1110+17119605..17125465CER1 protein, putative, expressed
LOC_Os10g33250Os.2322.2.S1_at10/1110+17119605..17125465CER1 protein, putative, expressed
LOC_Os10g33260OsAffx.18500.1.S1_at11/1110+17127907..17128922hypothetical protein
LOC_Os10g33270Os.54423.1.A1_x_at10/1110+17142228..17145456Cyanate hydratase, putative, expressed
LOC_Os10g33270Os.2500.1.S1_at8/1110+17142228..17145456Cyanate hydratase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042335biological_processcuticle biosynthesis
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0009924molecular_functionoctadecanal decarbonylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2322.1.S1_at--495--951Chr10:17120243..17120267 (25 bp)
AGGAACTCTGTTTATCCCATACTCA
LOC_Os10g33250
Os.2322.1.S1_at--520--3531Chr10:17120226..17120250 (25 bp)
CATACTCACAATTTCCTCCAAAGAT
LOC_Os10g33250
Os.2322.1.S1_at--371--2931Chr10:17120194..17120218 (25 bp)
AAGGACAGCTGCAGCTACTCGACAA
LOC_Os10g33250
Os.2322.1.S1_at--68--9371NONE
TCGACAACTCCTGCAATTGGCTGTA
NONE
Os.2322.1.S1_at--917--5251Chr10:17119995..17120019 (25 bp)
GAATCGCGGGAATTCTTCATGCGTT
LOC_Os10g33250
Os.2322.1.S1_at--532--9011Chr10:17119907..17119931 (25 bp)
TGCAATTATGCATGGGTTCTGCCCA
LOC_Os10g33250
Os.2322.1.S1_at--715--10591Chr10:17119891..17119915 (25 bp)
TTCTGCCCAGTTGCTCAAGGTTGAT
LOC_Os10g33250
Os.2322.1.S1_at--1013--8551Chr10:17119832..17119856 (25 bp)
TGGATTATGCTATGTGGTCACCGTA
LOC_Os10g33250
Os.2322.1.S1_at--700--6091Chr10:17119763..17119787 (25 bp)
GAGTAATTTCATCTGCCATGGTTTT
LOC_Os10g33250
Os.2322.1.S1_at--89--3931Chr10:17119704..17119728 (25 bp)
CTGGCCATGGCTACTTTCTGTATAA
LOC_Os10g33250
Os.2322.1.S1_at--1087--6891Chr10:17119679..17119703 (25 bp)
GTATCTGTCCTTTTTAGTCCATAGT
LOC_Os10g33250
Target Sequence 
AGGAACTCTGTTTATCCCATACTCACAATTTCCTCCAAAGATGGTACGCAAGGACAGCTGCAGCTACTCGACAACTCCTG
CAATTGGCTGTACCAAAAACGCTGCAGAATGTGCATTCATGCGAGAATTGGCTGCCAAGGAGGGTTATGAGCGCATGGCG
AATCGCGGGAATTCTTCATGCGTTGGAGGGATGGAATGAGCATGAATGTGGTGACAAGGTGCTTGATATGGACAAAGTTT
GGTCTGCTGCAATTATGCATGGGTTCTGCCCAGTTGCTCAAGGTTGATGATTCAGTTGCAAAGTATCAGAATAAGTTTTA
GCTGGATTATGCTATGTGGTCACCGTATCAGAAAGAGAGATGTTCTGTTGGCAAGAAGAGATATAGTATCTGAGTAATTT
CATCTGCCATGGTTTTTAAAACATTGTTCATCATCTCCTTTGATCAAAGACTGGCCATGGCTACTTTCTGTATAAGTATC
TGTCCTTTTTAGTCCATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis