Browse Element(s) Details


Os.26837.1.S2_at

Description gb:AK067894.1
DB_XREF= gi:32977912
TID=Os.26837.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26837 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123D09, full insert sequence.
FL= gb:AK064870.1 gb:AK067894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3329010/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33270Os.54423.1.A1_x_at10/1110+17142228..17145456Cyanate hydratase, putative, expressed
LOC_Os10g33270Os.2500.1.S1_at8/1110+17142228..17145456Cyanate hydratase, putative, expressed
LOC_Os10g33290Os.26837.1.S1_at11/1110+17155334..17161415TPR Domain containing protein, expressed
LOC_Os10g33290Os.26837.1.S2_at10/1110+17155334..17161415TPR Domain containing protein, expressed
LOC_Os10g33300Os.37083.2.S1_at1/1110+17162479..17162805retrotransposon protein, putative, unclassified
LOC_Os10g33304NANA10+17164076..17166851hypothetical protein
LOC_Os10g33310Os.51882.1.S1_at11/1110+17170254..17173783Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os10g33310Os.17475.1.S1_at9/1110+17170254..17173783Cyclin-dependent kinase inhibitor family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009846biological_processpollen germination
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26837.1.S2_at--139--3671Chr10:17155870..17155894 (25 bp)
CTTTGAAAACGCATCCTGGACATTG
LOC_Os10g33290
Os.26837.1.S2_at--1110--4791Chr10:17155759..17155783 (25 bp)
GCTCGGTGTGAATATTTATGCCCTT
LOC_Os10g33290
Os.26837.1.S2_at--156--10591Chr10:17155724..17155748 (25 bp)
TTCTCCATCATCCATGCAAACTTGT
LOC_Os10g33290
Os.26837.1.S2_at--714--331Chr10:17155697..17155721 (25 bp)
ATAAATGGTTCAGCCTTATTCCCTG
LOC_Os10g33290
Os.26837.1.S2_at--736--7671Chr10:17155629..17155653 (25 bp)
GGGATTCTCGTGACGTCATTGTGCC
LOC_Os10g33290
Os.26837.1.S2_at--475--10291Chr10:17155548..17155572 (25 bp)
TTTCCATTGTTGTGTACTCTACCGA
LOC_Os10g33290
Os.26837.1.S2_at--680--8571Chr10:17155465..17155489 (25 bp)
TGGTTGGTACAGATTCCGCTTAATT
LOC_Os10g33290
Os.26837.1.S2_at--290--8491Chr10:17155420..17155444 (25 bp)
TGGCTCGTGTTGTCGTAGCTAGCTA
LOC_Os10g33290
Os.26837.1.S2_at--18--1571NONE
AGCTAGTTCTGTGATTTGATTCCAT
NONE
Os.26837.1.S2_at--623--10791Chr10:17155385..17155409 (25 bp)
TTGATTCCATGCTCTAATTCTGCTG
LOC_Os10g33290
Os.26837.1.S2_at--869--8291Chr10:17155361..17155385 (25 bp)
GGCTTCAACTCCTGGATTCTTATCA
LOC_Os10g33290
Target Sequence 
CTTTGAAAACGCATCCTGGACATTGNNNTNNNNNNNNTNNNTTTNCNGGTAGCACCATAGCAACATGTAAAAAAAAAAAA
TCCAAAATGAAACAGGCCCATGCAAATGTAAGCTCGGTGTGAATATTTATGCCCTTTGCTGAAGCCTTCTCCATCATCCA
TGCAAACTTGTGGATAAATGGTTCAGCCTTATTCCCTGAACGTCAGTAAATCCGTTGTGCATGAATTGCTGAGATGTTCA
GGGGATTCTCGTGACGTCATTGTGCCGTCATTTTANGGCAAGGAGCGTTGTTTTAACATTTCTTTGGTACATGGTCATGA
ATTTTCCATTGTTGTGTACTCTACCGAATCTACTATTAGCTGAACTGGAATCAAATATCTTAACAGNATTGGAATCGGTG
GACGATGGTTGGTACAGATTCCGCTTAATTGAAGCAGACAACACGACCAGTGGCTCGTGTTGTCGTAGCTAGCTAGTTCT
GTGATTTGATTCCATGCTCTAATTCTGCTGGCTTCAACTCCTGGATTCTTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26837.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis