Browse Element(s) Details


Os.26043.1.S1_at

Description gb:AK105418.1
DB_XREF= gi:32990627
TID=Os.26043.1
CNT=65
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.26043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A10, full insert sequence.
FL= gb:AK119231.1 gb:AK105418.1 gb:AK103394.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2289011/11Nucleolar GTP-binding protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22840Os.25754.2.S1_x_at2/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22840OsAffx.31069.2.S1_x_at1/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22840Os.53479.1.S1_x_at1/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22850OsAffx.20387.1.S1_x_at2/113+13186585..13192714retrotransposon protein, putative, unclassified, expressed
LOC_Os03g22860NANA3+13194202..13195149hypothetical protein
LOC_Os03g22870Os.6507.1.S1_at11/113+13196884..13201064SAC3/GANP family protein, expressed
LOC_Os03g22880Os.25825.1.S1_at11/113+13201376..13204309Nucleolar protein Nop56, putative, expressed
LOC_Os03g22890Os.26043.1.S1_at11/113+13206155..13210903Nucleolar GTP-binding protein 2, putative, expressed
LOC_Os03g22900Os.48420.1.A1_at11/113+13215516..13226730transcriptional activator, putative, expressed
LOC_Os03g22910OsAffx.25197.1.S1_at11/113+13228297..13228654hypothetical protein
LOC_Os03g22919NANA3+13229366..13229698NA
LOC_Os03g22930OsAffx.25198.1.S1_at11/113+13232701..13233234hypothetical protein
LOC_Os03g22940OsAffx.12995.1.S1_at11/113+13235722..13236573expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26043.1.S1_at--706--7591Chr03:13210321..13210345 (25 bp)
GGGCAAGATTCCCTTTTTTGTGCCT
LOC_Os03g22890
Os.26043.1.S1_at--255--1991Chr03:13210430..13210454 (25 bp)
ACTGCTGCCGCCATGAAAGCGATAG
LOC_Os03g22890
Os.26043.1.S1_at--689--6491Chr03:13210450..13210474 (25 bp)
GATAGCGGGAATAATCTCATCACAG
LOC_Os03g22890
Os.26043.1.S1_at--1099--1511Chr03:13210476..13210500 (25 bp)
AGCAGATGAATGTTCCTTGCCAAAA
LOC_Os03g22890
Os.26043.1.S1_at--838--2851Chr03:13210530..13210554 (25 bp)
AAGTCGCGGAGCAATCAGAGTGATC
LOC_Os03g22890
Os.26043.1.S1_at--90--2311Chr03:13210559..13210583 (25 bp)
AAAGGCTAGGAACCCTGCATGATAA
LOC_Os03g22890
Os.26043.1.S1_at--388--8791Chr03:13210659..13210683 (25 bp)
TGTTACGATCGTTCAGTTCACCGGT
LOC_Os03g22890
Os.26043.1.S1_at--835--8111Chr03:13210742..13210766 (25 bp)
GGACTGGGAAACTTCTGTAACTTCA
LOC_Os03g22890
Os.26043.1.S1_at--442--7051Chr03:13210758..13210782 (25 bp)
GTAACTTCATATATTGTGTGGGCCT
LOC_Os03g22890
Os.26043.1.S1_at--1002--7471Chr03:13210773..13210797 (25 bp)
GTGTGGGCCTTTGTTGTAGACCAGA
LOC_Os03g22890
Os.26043.1.S1_at--1142--2631Chr03:13210822..13210846 (25 bp)
AACCATTTTGTTCCAACTGTACTTG
LOC_Os03g22890
Target Sequence 
GGGCAAGATTCCCTTTTTTGTGCCTCCACCACAGCAAGGTGAAGATAGTCCATCTGAAACAGCTGAACCTGTGGANAAAT
CCGATGAGGAAGGGGTGAGNAGTGACAGANACTGCTGCCGCCATGAAAGCGATAGCGGGAATAATCTCATCACAGCAGCA
GATGAATGTTCCTTGCCAAAAGGAATTTGGTGTAACTAATGAAGATAGTGAAGTCGCGGAGCAATCAGAGTGATCTACAN
AAAGGCTAGGAACCCTGCATGATAAAGAACAGGGCACAATTTTGCCAAATACCTAGAGATTTTATGAAGATTTGGTGTCT
AACAGGAATGTTACGATGAATGTTACGATCGTTCAGTTCACCGGTGCGTTNTACTGCAACGAAAGAGCGTTCACTGCAAC
GAAAGACNGGAATCAAGGGTGTGGGACTGGGAAACTTCTGTAACTTCATATATTGTGTGGGCCTTTGTTGTAGACCAGAT
AGAGTGTTTTGGTAGCTTAATATAACCATTTTGTTCCAACTGTACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis