Browse Element(s) Details


Os.26271.1.A1_s_at

Description gb:AK120577.1
DB_XREF= gi:37990200
TID=Os.26271.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135D06, full insert sequence.
FL= gb:AK120577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6749011/11OTU-like cysteine protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67450OsAffx.12450.2.S1_x_at11/111+39522538..39523821Lipase family protein
LOC_Os01g67459NANA1+39531454..39531706NA
LOC_Os01g67468NANA1+39533959..39534768NA
LOC_Os01g67480Os.50489.1.S1_at11/111+39538156..39543454Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g67480Os.12030.1.S1_at11/111+39538156..39543454Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g67490OsAffx.23959.2.S1_at11/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67490Os.26271.1.A1_s_at11/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67490Os.42585.1.S1_at10/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67500Os.8271.1.S1_a_at11/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67500Os.8271.1.S1_at11/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67500Os.8271.2.S1_x_at7/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67510Os.18205.1.S1_at10/111+39565700..39570792Protein recA, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26271.1.A1_s_at--53--2031Chr01:39543878..39543902 (25 bp)
ACTACGATGCGCTGCAGCCATCTCT
LOC_Os01g67490
Os.26271.1.A1_s_at--35--4771Chr01:39543868..39543892 (25 bp)
GCTGCAGCCATCTCTTGTAAGAACA
LOC_Os01g67490
Os.26271.1.A1_s_at--877--4431Chr01:39543862..39543886 (25 bp)
GCCATCTCTTGTAAGAACACAATCA
LOC_Os01g67490
Os.26271.1.A1_s_at--943--3991Chr01:39543711..39543735 (25 bp)
CCGAAGATTACGCTACCTAAGATTG
LOC_Os01g67490
Os.26271.1.A1_s_at--357--6551Chr01:39543706..39543730 (25 bp)
GATTACGCTACCTAAGATTGTTCTC
LOC_Os01g67490
Os.26271.1.A1_s_at--871--8131Chr01:39543679..39543703 (25 bp)
GGACAGTATCAAGATCCTCTGCTAC
LOC_Os01g67490
Os.26271.1.A1_s_at--108--1291Chr01:39543668..39543692 (25 bp)
AGATCCTCTGCTACATGATTTCACA
LOC_Os01g67490
Os.26271.1.A1_s_at--1062--1951Chr01:39543642..39543666 (25 bp)
ACTGTATAGTGGTATTGTGACACAT
LOC_Os01g67490
Os.26271.1.A1_s_at--356--2091Chr01:39543621..39543645 (25 bp)
ACATATGAAATGCTAGCCTGGCTTT
LOC_Os01g67490
Os.26271.1.A1_s_at--784--9991Chr01:39543608..39543632 (25 bp)
TAGCCTGGCTTTACTGTTCCATATT
LOC_Os01g67490
Os.26271.1.A1_s_at--120--8311Chr01:39543602..39543626 (25 bp)
GGCTTTACTGTTCCATATTTCATAT
LOC_Os01g67490
Target Sequence 
ACTACGATGCGCTGCAGCCATCTCTTGTAAGAACACAATCAAGGCTGAGAGGAATACAGATAACCGAAGATTACGCTACC
TAAGATTGTTCTCAAGGACAGTATCAAGATCCTCTGCTACATGATTTCACAAACTGTATAGTGGTATTGTGACACATATG
AAATGCTAGCCTGGCTTTACTGTTCCATATTTCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26271.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis