Browse Element(s) Details


Os.26478.1.S1_at

Description gb:AK067172.1
DB_XREF= gi:32977190
TID=Os.26478.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013097K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097K17, full insert sequence.
FL= gb:AK067172.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2545011/11histone-lysine N-methyltransferase, H3 lysine-9 specific 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25440Os.23952.1.S1_at11/117+14532905..14540052Ribosome biogenesis protein BOP1, putative, expressed
LOC_Os07g25450Os.26478.1.S1_at11/117+14561567..14568313histone-lysine N-methyltransferase, H3 lysine-9 specific 2, putative, expressed
LOC_Os07g25460OsAffx.28578.1.S1_at11/117+14572842..14574232hypothetical protein
LOC_Os07g25460Os.27476.1.A1_at10/117+14572842..14574232hypothetical protein
LOC_Os07g25470NANA7+14576642..14578288KE03 protein, putative, expressed
LOC_Os07g25480OsAffx.5434.1.S1_at11/117+14592890..14593169hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016571biological_processhistone methylation
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0005720cellular_componentnuclear heterochromatin
GO:0042054molecular_functionhistone methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26478.1.S1_at--701--2291Chr07:14563768..14563792 (25 bp)
AAATGTGTTTGTCCAGTTTGTGCTG
LOC_Os07g25450
Os.26478.1.S1_at--763--10751Chr07:14563794..14563818 (25 bp)
TTGACCATTACAACGCAGCTTATCC
LOC_Os07g25450
Os.26478.1.S1_at--30--6771Chr07:14563906..14563930 (25 bp)
GTTAACCATGTAGTCAGGCTGTCTA
LOC_Os07g25450
Os.26478.1.S1_at--1046--6331Chr07:14563967..14563991 (25 bp)
GATGCTTTCATAATCCTTCTCATGG
LOC_Os07g25450
Os.26478.1.S1_at--122--8971Chr07:14564011..14564032 (22 bp)
TGACAACAAGTTTCTCTGATGGCGA
LOC_Os07g25450
Os.26478.1.S1_at--609--711Chr07:14568015..14568039 (25 bp)
ATGATGTTTCAAGCCTTCCCATGAG
LOC_Os07g25450
Os.26478.1.S1_at--226--2331Chr07:14568046..14568070 (25 bp)
AAAGTCACAGCTCATTGTCATCCAC
LOC_Os07g25450
Os.26478.1.S1_at--887--10091Chr07:14568071..14568095 (25 bp)
TAGGCATCAACCGTCCGTTGTATAT
LOC_Os07g25450
Os.26478.1.S1_at--455--5051Chr07:14568182..14568206 (25 bp)
GCAGCAAGCACCGAGTTTCATACTT
LOC_Os07g25450
Os.26478.1.S1_at--257--3573Chr07:14568200..14568224 (25 bp)
CATACTTGACCTCTGTTTTTCTTTT
LOC_Os07g25450
Os.26478.1.S1_at--992--3271Chr07:14568286..14568310 (25 bp)
CAAAATGTGTCCCACTTCTGTCTGT
LOC_Os07g25450
Target Sequence 
AAATGTGTTTGTCCAGTTTGTGCTGTTTGACCATTACAACGCAGCTTATCCTCACCTCATGATCTTTGCCATGGAGAACA
TTCCACCATTGAGGGAGCTAAGCATTGACTATGGAATGATTGATGAATGGGTGGGAAAGTTAACCATGTAGTCAGGCTGT
CTACTAGAAGGCAATACTCAGTTTATCTTCCTTTGTTTTGATGCTTTCATAATCCTTCTCATGGAGATTTTTGAGGTGAT
TGCTGACAACAAGTTTCTCTGATGGCGAATAACAGAAGCTTGCATATGGGATGATGTTTCAAGCCTTCCCATGAGGAAGG
CAAAGTCACAGCTCATTGTCATCCACTAGGCATCAACCGTCCGTTGTATATTTTTGCATGGTAGCTGCAGTGCCCCGTGG
CTGATTCCCTCTCACCCTTGAAGCTTNATGCTTGCTTTTGTAGGAAGCTTGTTTTGCGCAGCAAGCACCGAGTTTCATAC
TTGACCTCTGTTTTTCTTTTTTTTTNCCCTTCAATTGCTACGAGAACTCCATATGTACATATATCTGTACATTACATGAC
TTCAAAATGTGTCCCACTTCTGTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis