Browse Element(s) Details


Os.23952.1.S1_at

Description gb:AK111603.1
DB_XREF= gi:37988266
TID=Os.23952.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-044-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096A10, full insert sequence.
FL= gb:AK111603.1 gb:AK112040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2544011/11Ribosome biogenesis protein BOP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25390OsAffx.12926.1.S1_at2/117+14504238..14510791SNF2 domain-containing protein, putative, expressed
LOC_Os07g25390Os.15946.1.S1_at1/117+14504238..14510791SNF2 domain-containing protein, putative, expressed
LOC_Os07g25400OsAffx.16403.1.S1_at11/117+14515170..14515409hypothetical protein
LOC_Os07g25410Os.20070.1.S1_x_at10/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25410Os.52673.1.S1_at4/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25410OsAffx.3017.1.S1_x_at1/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25420Os.12424.1.S1_at11/117+14525756..1452882826S proteasome non-ATPase regulatory subunit Nin1/mts3 family protein, expressed
LOC_Os07g25430Os.46422.1.S1_at11/117+14531621..14532691Photosystem I reaction centre subunit IV/PsaE family protein, expressed
LOC_Os07g25440Os.23952.1.S1_at11/117+14532905..14540052Ribosome biogenesis protein BOP1, putative, expressed
LOC_Os07g25450Os.26478.1.S1_at11/117+14561567..14568313histone-lysine N-methyltransferase, H3 lysine-9 specific 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23952.1.S1_at--288--10551Chr07:14533826..14533850 (25 bp)
TTCTTCGTGGTCATTCAAGTTCAGA
LOC_Os07g25440
Os.23952.1.S1_at--1153--7911Chr07:14533360..14533384 (25 bp)
GGATTGCAAATTCCACCCAAGACAG
LOC_Os07g25440
Os.23952.1.S1_at--502--7211Chr07:14533305..14533329 (25 bp)
GTCGTTAGGCTTTATTGCGACTAAA
LOC_Os07g25440
Os.23952.1.S1_at--714--931Chr07:14533243..14533267 (25 bp)
AGGCAATGCAATATGTCTGGTCTTT
LOC_Os07g25440
Os.23952.1.S1_at--86--8011Chr07:14533196..14533220 (25 bp)
GGATGGTGTATCATGCCAAACACTT
LOC_Os07g25440
Os.23952.1.S1_at--283--5871Chr07:14533166..14533190 (25 bp)
GAGCCAGGGCACGTGTTGAGCCATC
LOC_Os07g25440
Os.23952.1.S1_at--15--5871Chr07:14533149..14533173 (25 bp)
GAGCCATCTGTGCTGCCTAAATTTT
LOC_Os07g25440
Os.23952.1.S1_at--1058--5651Chr07:14533073..14533097 (25 bp)
GACATGCAGAGTGTTCCAGAATCGT
LOC_Os07g25440
Os.23952.1.S1_at--490--5911Chr07:14533005..14533029 (25 bp)
GAGCTAATCTATGCTATTCCAAAAG
LOC_Os07g25440
Os.23952.1.S1_at--1146--6151Chr07:14532981..14533005 (25 bp)
GAGGTTTTGTGCTGTCACAAGCTTT
LOC_Os07g25440
Os.23952.1.S1_at--988--3291Chr07:14532966..14532990 (25 bp)
CACAAGCTTTTGTGGTCTCTGAAGC
LOC_Os07g25440
Target Sequence 
TTCTTCGTGGTCATTCAAGTTCAGATGGAAGAGGAGTTCTGGATTGCAAATTCCACCCAAGACAGCCTTGGNTTGTTCAC
TGCTGGTGCTGACTCNGTCGTTAGGCTTTATTGCGACTAAAGGTGCTTTCGAAAAAAAAAAACAATAGATGGTTTTACAA
GGCAATGCAATATGTCTGGTCTTTNCTACGGGCTCGTATACGATGATGGATGGTGTATCATGCCAAACACTTAACTGGAG
CCAGGGCACGTGTTGAGCCATCTGTGCTGCCTAAATTTTGGTTCAAATTATTTGTACCCTATTGTTATTTTAGTTCTGTA
GTAACAGTGAGACATGCAGAGTGTTCCAGAATCGTGGCAAAGGTAGGTGTGNTACTAGGATAAACAGATAAGGAACNCCG
AGCTAATCTATGCTATTCCAAAAGAGGTTTTGTGCTGTCACAAGCTTTTGTGGTCTCTGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis