Browse Element(s) Details


OsAffx.12926.1.S1_at

Description tigr:9631.m01846
TID=OsAffx.12926.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g187109/11expressed protein
LOC_Os07g253902/11SNF2 domain-containing protein, putative, expressed
LOC_Os08g192502/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18640OsAffx.12924.1.S1_at11/113+10422283..10425052Multicopper oxidase family protein, expressed
LOC_Os03g18650OsAffx.13097.1.S1_s_at11/113+10429868..10430538hypothetical protein
LOC_Os03g18660OsAffx.3270.1.S1_at11/113+10431282..10431818hypothetical protein
LOC_Os03g18670OsAffx.12925.1.S1_at11/113+10432606..10434090hypothetical protein
LOC_Os03g18680Os.51152.1.S1_at11/113+10436015..10438673expressed protein
LOC_Os03g18690Os.12727.1.S1_at11/113+10441483..1044527926S protease regulatory subunit 4 homolog, putative, expressed
LOC_Os03g18700Os.16391.1.S1_at11/113+10446403..10448912expressed protein
LOC_Os03g18710Os.4931.1.S1_s_at11/113+10449707..10455813expressed protein
LOC_Os03g18710OsAffx.12926.1.S1_at9/113+10449707..10455813expressed protein
LOC_Os03g18720Os.12051.1.S1_at11/113+10457166..10461633RNA recognition motif family protein, expressed
LOC_Os03g18729Os.6910.1.S1_at1/113+10463330..10463902hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0016337biological_processcell-cell adhesion
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0045010biological_processactin nucleation
GO:0051127biological_processpositive regulation of actin nucleation
GO:0031209cellular_componentSCAR complex
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12926.1.S1_at--1029--4771Chr03:10450384..10450408 (25 bp)
GCTCCAAGAACGAACTTGCAAGTGG
LOC_Os03g18710
OsAffx.12926.1.S1_at--693--4331Chr03:10450356..10450380 (25 bp)
CCATCCTGGAGAGGGCTAATGCTAT
LOC_Os03g18710
OsAffx.12926.1.S1_at--613--3531Chr03:10450355..10450379 (25 bp)
CATCCTGGAGAGGGCTAATGCTATT
LOC_Os03g18710
OsAffx.12926.1.S1_at--56--571Chr03:10450354..10450378 (25 bp)
ATCCTGGAGAGGGCTAATGCTATTC
LOC_Os03g18710
OsAffx.12926.1.S1_at--923--9251Chr03:10450353..10450377 (25 bp)
TCCTGGAGAGGGCTAATGCTATTCG
LOC_Os03g18710
OsAffx.12926.1.S1_at--172--4271Chr03:10450352..10450376 (25 bp)
CCTGGAGAGGGCTAATGCTATTCGC
LOC_Os03g18710
OsAffx.12926.1.S1_at--674--3911Chr03:10450351..10450375 (25 bp)
CTGGAGAGGGCTAATGCTATTCGCC
LOC_Os03g18710
OsAffx.12926.1.S1_at--483--8553Chr08:11506300..11506608 (25 bp)
TGGAGAGGGCTAATGCTATTCGCCA
LOC_Os08g19250
OsAffx.12926.1.S1_at--641--8033Chr08:11506299..11506607 (25 bp)
GGAGAGGGCTAATGCTATTCGCCAG
LOC_Os08g19250
Target Sequence 
GCTCCAAGAACGAACTTGCAAGTGGTGGCCATCCTGGAGAGGGCTAATGCTATTCGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis