Browse Element(s) Details


Os.12727.1.S1_at

Description gb:AB037154.1
DB_XREF= gi:17297986
GEN=OsRPT2b
TID=Os.12727.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12727 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRPT2b mRNA for 26S proteasome regulatory particle triple-A ATPase subunit2b, complete cds.
PROD=26S proteasome regulatory particle triple-AATPase subunit2b
FL= gb:AK058779.1 gb:AK069811.1 gb:AB037154.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1869011/1126S protease regulatory subunit 4 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18630Os.49177.1.S1_at11/113+10416745..10419483Leucine Rich Repeat family protein, expressed
LOC_Os03g18630OsAffx.12923.1.S1_x_at11/113+10416745..10419483Leucine Rich Repeat family protein, expressed
LOC_Os03g18640OsAffx.12924.1.S1_at11/113+10422283..10425052Multicopper oxidase family protein, expressed
LOC_Os03g18650OsAffx.13097.1.S1_s_at11/113+10429868..10430538hypothetical protein
LOC_Os03g18660OsAffx.3270.1.S1_at11/113+10431282..10431818hypothetical protein
LOC_Os03g18670OsAffx.12925.1.S1_at11/113+10432606..10434090hypothetical protein
LOC_Os03g18680Os.51152.1.S1_at11/113+10436015..10438673expressed protein
LOC_Os03g18690Os.12727.1.S1_at11/113+10441483..1044527926S protease regulatory subunit 4 homolog, putative, expressed
LOC_Os03g18700Os.16391.1.S1_at11/113+10446403..10448912expressed protein
LOC_Os03g18710Os.4931.1.S1_s_at11/113+10449707..10455813expressed protein
LOC_Os03g18710OsAffx.12926.1.S1_at9/113+10449707..10455813expressed protein
LOC_Os03g18720Os.12051.1.S1_at11/113+10457166..10461633RNA recognition motif family protein, expressed
LOC_Os03g18729Os.6910.1.S1_at1/113+10463330..10463902hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005516molecular_functioncalmodulin binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12727.1.S1_at--744--10731Chr03:10444387..10444411 (25 bp)
TTGAAAGTCTTGACCCAGCTTTGCT
LOC_Os03g18690
Os.12727.1.S1_at--1140--3391Chr03:10444402..10444426 (25 bp)
CAGCTTTGCTTCGACCTGGTCGGAT
LOC_Os03g18690
Os.12727.1.S1_at--233--6531Chr03:10444436..10444460 (25 bp)
GATTGAATTTCCGTTACCAGATATT
LOC_Os03g18690
Os.12727.1.S1_at--29--2651Chr03:10444463..10444484 (22 bp)
AACCAGGAGGCGGATCTTCCAGATA
LOC_Os03g18690
Os.12727.1.S1_at--254--2351Chr03:10444647..10444671 (25 bp)
AAAGCAATATGTACGGAGGCCGGAT
LOC_Os03g18690
Os.12727.1.S1_at--444--891Chr03:10444663..10444687 (25 bp)
AGGCCGGATTGCTCGCTTTAAGGGA
LOC_Os03g18690
Os.12727.1.S1_at--805--10111Chr03:10444965..10444989 (25 bp)
TATGTGAGACATCCACCACTCATCA
LOC_Os03g18690
Os.12727.1.S1_at--891--391Chr03:10444986..10445010 (25 bp)
ATCAGCACCAGAATTACCTCCAGGA
LOC_Os03g18690
Os.12727.1.S1_at--839--3871Chr03:10445062..10445086 (25 bp)
CGGAGAATGTTTGCTTACACCCTTC
LOC_Os03g18690
Os.12727.1.S1_at--1095--3351Chr03:10445079..10445103 (25 bp)
CACCCTTCTTATTCAGCAATGTCGA
LOC_Os03g18690
Os.12727.1.S1_at--343--8211Chr03:10445138..10445162 (25 bp)
GGAATGCATGCAGTTACGGTTCAAT
LOC_Os03g18690
Target Sequence 
TTGAAAGTCTTGACCCAGCTTTGCTTCGACCTGGTCGGATAGACAGAAAGATTGAATTTCCGTTACCAGATATTAAAACC
AGGAGGCGGATCTTCCAGATACACACATCTAAGATGACATTGGCAGATGATGTTAACCTAGAAGAGTTTGTGATGACCAA
GGATGAGTTTTCTGGTGCTGACATCAAAGCAATATGTACGGAGGCCGGATTGCTCGCTTTAAGGGAGCGCAGAATGAAGG
TGACACATGCCGATTTCAAGAAGGCCAAAGAGAAGGTCATGTTCAAGAAGAAGGAAGGTGTACCGGAAGGGCTTTATATG
TGAGACATCCACCACTCATCAGCACCAGAATTACCTCCAGGACACGGTTAAGTGTAATAGAGAACTGGTAGAGCTGGTGT
TTGGTTCAATGTTCGGAGAATGTTTGCTTACACCCTTCTTATTCAGCAATGTCGAACTAAAGAACCCCCTGAACAATGTA
TGGCTACCAGGAATGCATGCAGTTACGGTTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis