Browse Element(s) Details


OsAffx.3270.1.S1_at

Description tigr:9631.m01841
TID=OsAffx.3270.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1866011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18620Os.50226.1.S1_at11/113+10407958..10412760pentatricopeptide, putative, expressed
LOC_Os03g18630Os.49177.1.S1_at11/113+10416745..10419483Leucine Rich Repeat family protein, expressed
LOC_Os03g18630OsAffx.12923.1.S1_x_at11/113+10416745..10419483Leucine Rich Repeat family protein, expressed
LOC_Os03g18640OsAffx.12924.1.S1_at11/113+10422283..10425052Multicopper oxidase family protein, expressed
LOC_Os03g18650OsAffx.13097.1.S1_s_at11/113+10429868..10430538hypothetical protein
LOC_Os03g18660OsAffx.3270.1.S1_at11/113+10431282..10431818hypothetical protein
LOC_Os03g18670OsAffx.12925.1.S1_at11/113+10432606..10434090hypothetical protein
LOC_Os03g18680Os.51152.1.S1_at11/113+10436015..10438673expressed protein
LOC_Os03g18690Os.12727.1.S1_at11/113+10441483..1044527926S protease regulatory subunit 4 homolog, putative, expressed
LOC_Os03g18700Os.16391.1.S1_at11/113+10446403..10448912expressed protein
LOC_Os03g18710Os.4931.1.S1_s_at11/113+10449707..10455813expressed protein
LOC_Os03g18710OsAffx.12926.1.S1_at9/113+10449707..10455813expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3270.1.S1_at--461--4691Chr03:10431325..10431349 (25 bp)
GCGGCTCCTTCGACGTGGTCCGCAT
LOC_Os03g18660
OsAffx.3270.1.S1_at--682--2571Chr03:10431360..10431384 (25 bp)
AACGGCCACATCGAGGAGTACGCGC
LOC_Os03g18660
OsAffx.3270.1.S1_at--1106--8331Chr03:10431463..10431487 (25 bp)
GGCGGATCTTGATCGTTTCGCCCGA
LOC_Os03g18660
OsAffx.3270.1.S1_at--57--9591Chr03:10431469..10431493 (25 bp)
TCTTGATCGTTTCGCCCGAGTCTGA
LOC_Os03g18660
OsAffx.3270.1.S1_at--951--6831Chr03:10431477..10431501 (25 bp)
GTTTCGCCCGAGTCTGAGCTCAAGC
LOC_Os03g18660
OsAffx.3270.1.S1_at--664--1151Chr03:10431487..10431511 (25 bp)
AGTCTGAGCTCAAGCGCGGGTGCTT
LOC_Os03g18660
OsAffx.3270.1.S1_at--1129--9711Chr03:10431496..10431520 (25 bp)
TCAAGCGCGGGTGCTTCTACTTCCT
LOC_Os03g18660
OsAffx.3270.1.S1_at--1091--1391Chr03:10431637..10431661 (25 bp)
AGACGTCCGTGCTGGCCCGTGATGC
LOC_Os03g18660
OsAffx.3270.1.S1_at--56--9131Chr03:10431646..10431670 (25 bp)
TGCTGGCCCGTGATGCGACCGTTGC
LOC_Os03g18660
OsAffx.3270.1.S1_at--469--8831Chr03:10431656..10431680 (25 bp)
TGATGCGACCGTTGCGGCGAAGAAC
LOC_Os03g18660
OsAffx.3270.1.S1_at--962--8011Chr03:10431713..10431737 (25 bp)
GGAGGGCAAGGCCACCGGCTGCAAG
LOC_Os03g18660
Target Sequence 
GCGGCTCCTTCGACGTGGTCCGCATCGTCCACCTCAACGGCCACATCGAGGAGTACGCGCGCCCGGTCACCGCCGGCGAG
GTCGTCGCCGCGCACCCGAGCCACGTCCTGAGCCGGCCGTGCTCCCAGGGCGGCGCGCGGCGGATCTTGATCGTTTCGCC
CGAGTCTGAGCTCAAGCGCGGGTGCTTCTACTTCCTCGTGCCGGCCTCGTCGGTGCCGGAGAAGAAGATCAAGAGGAAGC
CGTCGTCGTCGTCGGCCCCGCCGCGCCCGCGGCCGCAGCAGAAGAAGGCGCCACGGCCGCCGCCGACGCCGGAGACGTCC
GTGCTGGCCCGTGATGCGACCGTTGCGGCGAAGAACGGCGGCGACAGCTACCTGGCGGAGGTGCTGGCGGAGGGCAAGGC
CACCGGCTGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis