Browse Element(s) Details


Os.4931.1.S1_s_at

Description gb:AU173830
DB_XREF= gi:13165033
DB_XREF=AU173830
CLONE=R3984
TID=Os.4931.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.4931 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1871011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18640OsAffx.12924.1.S1_at11/113+10422283..10425052Multicopper oxidase family protein, expressed
LOC_Os03g18650OsAffx.13097.1.S1_s_at11/113+10429868..10430538hypothetical protein
LOC_Os03g18660OsAffx.3270.1.S1_at11/113+10431282..10431818hypothetical protein
LOC_Os03g18670OsAffx.12925.1.S1_at11/113+10432606..10434090hypothetical protein
LOC_Os03g18680Os.51152.1.S1_at11/113+10436015..10438673expressed protein
LOC_Os03g18690Os.12727.1.S1_at11/113+10441483..1044527926S protease regulatory subunit 4 homolog, putative, expressed
LOC_Os03g18700Os.16391.1.S1_at11/113+10446403..10448912expressed protein
LOC_Os03g18710Os.4931.1.S1_s_at11/113+10449707..10455813expressed protein
LOC_Os03g18710OsAffx.12926.1.S1_at9/113+10449707..10455813expressed protein
LOC_Os03g18720Os.12051.1.S1_at11/113+10457166..10461633RNA recognition motif family protein, expressed
LOC_Os03g18729Os.6910.1.S1_at1/113+10463330..10463902hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0016337biological_processcell-cell adhesion
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0045010biological_processactin nucleation
GO:0051127biological_processpositive regulation of actin nucleation
GO:0031209cellular_componentSCAR complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4931.1.S1_s_at--701--3891Chr03:10450186..10450210 (25 bp)
CTGGAGTGACTAGCTGATTCCTCAG
LOC_Os03g18710
Os.4931.1.S1_s_at--727--6571Chr03:10450171..10450195 (25 bp)
GATTCCTCAGAGCATGCAATTTGGC
LOC_Os03g18710
Os.4931.1.S1_s_at--1012--3111Chr03:10450154..10450178 (25 bp)
AATTTGGCGCCTGATGTTTCTTCAC
LOC_Os03g18710
Os.4931.1.S1_s_at--919--6832Chr05:13998706..13998725 (20 bp)
GTTTCTTCACATTCACATTTCACAA
NONE
Os.4931.1.S1_s_at--634--591Chr03:10450100..10450124 (25 bp)
ATGCCATCATGGACTTGCGTTTCCT
LOC_Os03g18710
Os.4931.1.S1_s_at--1093--10691Chr03:10450086..10450110 (25 bp)
TTGCGTTTCCTGTTCTTGCATAAGT
LOC_Os03g18710
Os.4931.1.S1_s_at--689--3671Chr03:10449943..10449967 (25 bp)
CTTTTCCGGCACGTGATGTGTTTAC
LOC_Os03g18710
Os.4931.1.S1_s_at--545--1911Chr03:10449933..10449957 (25 bp)
ACGTGATGTGTTTACGCCCCGTTTG
LOC_Os03g18710
Os.4931.1.S1_s_at--385--4531Chr03:10449918..10449942 (25 bp)
GCCCCGTTTGGAACAGGAATTTCAT
LOC_Os03g18710
Os.4931.1.S1_s_at--1156--9232Chr03:10449841..10449865 (25 bp)
TCCTTCCAAACATGGCCTTTGTTGT
LOC_Os03g18710
Os.4931.1.S1_s_at--1086--9371Chr03:10449811..10449835 (25 bp)
TCGATGGGCCTCCTGTAACTTGATG
LOC_Os03g18710
Target Sequence 
CTGGAGTGACTAGCTGATTCCTCAGAGCATGCAATTTGGCGCCTGATGTTTCTTCACATTCACATTTCACAAGGTCTNTG
GTGATCATGCCATCATGGACTTGCGTTTCCTGTTCTTGCATAAGTAGAGCTAGCAAACTGTGAAATGAACTACAGGGTAT
CATCTGATAANGAAGCTTAATGTNTCATATGAAGTTCATGCCATGAAGATGCAACATGTAAACGGTATATCAATTTTTTC
CCGCTTTTCCGGCACGTGATGTGTTTACGCCCCGTTTGGAACAGGAATTTCATAGGGATTTCNCGTCGAACAATTCAAAT
TCCGTTGAAATCCANAGAAATTCCCTCCTTCCAAACATGGCCTTTGTTGTNTTTGTCGATGGGCCTCCTGTAACTTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4931.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis