Browse Element(s) Details


OsAffx.12925.1.S1_at

Description tigr:9631.m01842
TID=OsAffx.12925.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1867011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18620Os.50226.1.S1_at11/113+10407958..10412760pentatricopeptide, putative, expressed
LOC_Os03g18630Os.49177.1.S1_at11/113+10416745..10419483Leucine Rich Repeat family protein, expressed
LOC_Os03g18630OsAffx.12923.1.S1_x_at11/113+10416745..10419483Leucine Rich Repeat family protein, expressed
LOC_Os03g18640OsAffx.12924.1.S1_at11/113+10422283..10425052Multicopper oxidase family protein, expressed
LOC_Os03g18650OsAffx.13097.1.S1_s_at11/113+10429868..10430538hypothetical protein
LOC_Os03g18660OsAffx.3270.1.S1_at11/113+10431282..10431818hypothetical protein
LOC_Os03g18670OsAffx.12925.1.S1_at11/113+10432606..10434090hypothetical protein
LOC_Os03g18680Os.51152.1.S1_at11/113+10436015..10438673expressed protein
LOC_Os03g18690Os.12727.1.S1_at11/113+10441483..1044527926S protease regulatory subunit 4 homolog, putative, expressed
LOC_Os03g18700Os.16391.1.S1_at11/113+10446403..10448912expressed protein
LOC_Os03g18710Os.4931.1.S1_s_at11/113+10449707..10455813expressed protein
LOC_Os03g18710OsAffx.12926.1.S1_at9/113+10449707..10455813expressed protein
LOC_Os03g18720Os.12051.1.S1_at11/113+10457166..10461633RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12925.1.S1_at--805--4231Chr03:10432945..10432969 (25 bp)
CCGAGGTTGGCGTGCAGCATGTCTA
LOC_Os03g18670
OsAffx.12925.1.S1_at--1011--5051Chr03:10432932..10432956 (25 bp)
GCAGCATGTCTACCGGGAGAGCAAC
LOC_Os03g18670
OsAffx.12925.1.S1_at--676--5991Chr03:10432916..10432940 (25 bp)
GAGAGCAACCACAGGTCGCCGATGA
LOC_Os03g18670
OsAffx.12925.1.S1_at--727--6871Chr03:10432868..10432892 (25 bp)
GTATCCCGGAGTCTGGACGCCGTCA
LOC_Os03g18670
OsAffx.12925.1.S1_at--451--1471Chr03:10432830..10432854 (25 bp)
AGAAGGCCAACAATGACCGCTGCGG
LOC_Os03g18670
OsAffx.12925.1.S1_at--209--5811Chr03:10432795..10432819 (25 bp)
GACGCGCATGCGTTACAGCGACAAT
LOC_Os03g18670
OsAffx.12925.1.S1_at--1049--1451Chr03:10432768..10432792 (25 bp)
AGAAGGCTTCTTGGAGATGGCCCGC
LOC_Os03g18670
OsAffx.12925.1.S1_at--719--9031Chr03:10432740..10432764 (25 bp)
TGCACGCACAAACGCCGAGCAGTGG
LOC_Os03g18670
OsAffx.12925.1.S1_at--189--5991Chr03:10432687..10432711 (25 bp)
GAGACAGAGATCGTCGCCATGGCCA
LOC_Os03g18670
OsAffx.12925.1.S1_at--1070--7231Chr03:10432675..10432699 (25 bp)
GTCGCCATGGCCAAAGTCGGTGCAT
LOC_Os03g18670
OsAffx.12925.1.S1_at--141--8651Chr03:10432651..10432675 (25 bp)
TGGGCACGCGGCAGGATCGATCAAC
LOC_Os03g18670
Target Sequence 
CCGAGGTTGGCGTGCAGCATGTCTACCGGGAGAGCAACCACAGGTCGCCGATGACGTGCTCTGCCCCAGGCGTACCGGTA
TCCCGGAGTCTGGACGCCGTCATCCCCCGTCGCCGAGAAGGCCAACAATGACCGCTGCGGCGTCGCGCACGACGCGCATG
CGTTACAGCGACAATCAAGAAGGCTTCTTGGAGATGGCCCGCAGCTGCACGCACAAACGCCGAGCAGTGGCTGTGCGGCC
GCTGGTGCAAAGAACGTGGAGACAGAGATCGTCGCCATGGCCAAAGTCGGTGCATGGGCACGCGGCAGGATCGATCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12925.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis