Browse Element(s) Details


Os.12051.1.S1_at

Description gb:AK103337.1
DB_XREF= gi:32988546
TID=Os.12051.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12051 (NCBI UniGene Cluster)
UG_TITLE=MRNA for U2 small nuclear RNA-associated B antigen
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126A09, full insert sequence.
FL= gb:AK103337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1872011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18670OsAffx.12925.1.S1_at11/113+10432606..10434090hypothetical protein
LOC_Os03g18680Os.51152.1.S1_at11/113+10436015..10438673expressed protein
LOC_Os03g18690Os.12727.1.S1_at11/113+10441483..1044527926S protease regulatory subunit 4 homolog, putative, expressed
LOC_Os03g18700Os.16391.1.S1_at11/113+10446403..10448912expressed protein
LOC_Os03g18710Os.4931.1.S1_s_at11/113+10449707..10455813expressed protein
LOC_Os03g18710OsAffx.12926.1.S1_at9/113+10449707..10455813expressed protein
LOC_Os03g18720Os.12051.1.S1_at11/113+10457166..10461633RNA recognition motif family protein, expressed
LOC_Os03g18729Os.6910.1.S1_at1/113+10463330..10463902hypothetical protein
LOC_Os03g18740Os.5616.1.S1_at11/113+10481046..10482322Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g18740Os.34729.2.S1_x_at1/113+10481046..10482322Sex determination protein tasselseed 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0005634cellular_componentnucleus
GO:0005654cellular_componentnucleoplasm
GO:0005685cellular_componentsnRNP U1
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0015030cellular_componentCajal body
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12051.1.S1_at--141--5791Chr03:10457725..10457749 (25 bp)
GACGACAGCCAGTCTATGGTTGCAA
LOC_Os03g18720
Os.12051.1.S1_at--717--2691Chr03:10457697..10457721 (25 bp)
AAGCTCTGCAGGGTTTCAAGATCAC
LOC_Os03g18720
Os.12051.1.S1_at--1028--2591Chr03:10457665..10457689 (25 bp)
AACCCAATGGCTATATCCTACGCAA
LOC_Os03g18720
Os.12051.1.S1_at--279--811Chr03:10457625..10457649 (25 bp)
ATGGGATCCCACAATCTGGCAAGAA
LOC_Os03g18720
Os.12051.1.S1_at--14--8751Chr03:10457594..10457618 (25 bp)
TGTACTTGTAAGACTTTCCGCCCTT
LOC_Os03g18720
Os.12051.1.S1_at--107--4551Chr03:10457575..10457599 (25 bp)
GCCCTTAGCTTTCAAACTGCTGTAT
LOC_Os03g18720
Os.12051.1.S1_at--199--9551Chr03:10457470..10457494 (25 bp)
TCTTTTTGTTAACCCTGCTTTTGAT
LOC_Os03g18720
Os.12051.1.S1_at--244--9892Chr04:145407..145803 (25 bp)
TACATTATCTTTTCTCCTACACTGG
NONE
Os.12051.1.S1_at--313--4011Chr03:10457320..10457344 (25 bp)
CGTCCATTTTCCTTGGTCAGAGATG
LOC_Os03g18720
Os.12051.1.S1_at--695--351Chr03:10457258..10457282 (25 bp)
ATAAGTGTCACCTCAGTAGTTGCAG
LOC_Os03g18720
Os.12051.1.S1_at--897--2231Chr03:10457167..10457191 (25 bp)
ACAATAAAGTGTGCGGCCTTCTACT
LOC_Os03g18720
Target Sequence 
GACGACAGCCAGTCTATGGTTGCAATGCAAGCTCTGCAGGGTTTCAAGATCACCCCATACAACCCAATGGCTATATCCTA
CGCAAAGAAGTGAATGATCCATGGGATCCCACAATCTGGCAAGAAAACCTCTGTACTTGTAAGACTTTCCGCCCTTAGCT
TTCAAACTGCTGTATCAGTTTTCTAACACTGTATTTTTGGAAAGCAATTGCTTAGTTTAGAAGTCTTTGTTGCTTAAATC
ATATTTGGTCTTCATTCTTTTTGTTAACCCTGCTTTTGATGCTGGCANGTCTGGTATTGTGGCCTTTGTAGGCTACATTA
TCTTTTCTCCTACACTGGTGGTAGAAGTTAGAAGATGTATCNCTCCCTTAAAAGCCAAGAGAANATCATGCCCCTATATT
CCCCTCGTCCATTTTCCTTGGTCAGAGATGAATGAGGTGTATATGCCATATTATATTGCCAAAAATCATAAGTGTCACCT
CAGTAGTTGCAGGCATGATGATTGTTGAACACGTATTTTAGTGGTGGGATGGTAGGTTTCGTGGCCTTGNGATTTTATAC
AATAAAGTGTGCGGCCTTCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12051.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis