Browse Element(s) Details


Os.20070.1.S1_x_at

Description gb:AK059240.1
DB_XREF= gi:32969258
TID=Os.20070.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20070 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-F07, full insert sequence.
FL= gb:AK059240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2541010/11metallopeptidase M24 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25360Os.49815.1.S1_at11/117+14493563..14497509retrotransposon protein, putative, unclassified, expressed
LOC_Os07g25360Os.53842.1.S1_x_at1/117+14493563..14497509retrotransposon protein, putative, unclassified, expressed
LOC_Os07g25370OsAffx.28576.4.S1_at11/117+14500360..14500938Myb-like DNA-binding domain containing protein
LOC_Os07g25380OsAffx.28577.1.S1_at11/117+14501285..14501695hypothetical protein
LOC_Os07g25390OsAffx.12926.1.S1_at2/117+14504238..14510791SNF2 domain-containing protein, putative, expressed
LOC_Os07g25390Os.15946.1.S1_at1/117+14504238..14510791SNF2 domain-containing protein, putative, expressed
LOC_Os07g25400OsAffx.16403.1.S1_at11/117+14515170..14515409hypothetical protein
LOC_Os07g25410Os.20070.1.S1_x_at10/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25410Os.52673.1.S1_at4/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25410OsAffx.3017.1.S1_x_at1/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25420Os.12424.1.S1_at11/117+14525756..1452882826S proteasome non-ATPase regulatory subunit Nin1/mts3 family protein, expressed
LOC_Os07g25430Os.46422.1.S1_at11/117+14531621..14532691Photosystem I reaction centre subunit IV/PsaE family protein, expressed
LOC_Os07g25440Os.23952.1.S1_at11/117+14532905..14540052Ribosome biogenesis protein BOP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016485biological_processprotein processing
GO:0031365biological_processN-terminal protein amino acid modification
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004239molecular_functionmethionyl aminopeptidase activity
GO:0008235molecular_functionmetalloexopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20070.1.S1_x_at--331--5291Chr07:14519847..14519867 (21 bp)
GAATGGATACCACGGTGACACCTCA
LOC_Os07g25410
Os.20070.1.S1_x_at--105--5151Chr07:14519669..14519808 (25 bp)
GCAACTTGTAAAGCCTGCAAACACG
LOC_Os07g25410
Os.20070.1.S1_x_at--86--6091Chr07:14519241..14519265 (25 bp)
GAGTACGGGTACAGCATCGATCCCT
LOC_Os07g25410
Os.20070.1.S1_x_at--375--4131Chr07:14519034..14519244 (25 bp)
CCCTTTGTCGGACATTCACAATTGG
LOC_Os07g25410
Os.20070.1.S1_x_at--797--10031Chr07:14518945..14518968 (24 bp)
TAGAGCCTACTCTGTCCATGGGAGG
LOC_Os07g25410
Os.20070.1.S1_x_at--272--5091Chr07:14518803..14518827 (25 bp)
GCACCCGCGGTGAGATGACGAGAAA
LOC_Os07g25410
Os.20070.1.S1_x_at--332--5591Chr07:14518782..14518806 (25 bp)
GAAATTCTACGCAACTAGCACCACT
LOC_Os07g25410
Os.20070.1.S1_x_at--232--4371Chr07:14518762..14518786 (25 bp)
CCACTTGCATATCGTGCTGGTCTAA
LOC_Os07g25410
Os.20070.1.S1_x_at--861--2711Chr07:14518737..14518761 (25 bp)
AAGCATCCTTTTCTCAGTTTTCATC
LOC_Os07g25410
Os.20070.1.S1_x_at--720--2931Chr07:14518700..14518724 (25 bp)
AAGGCAACTCATGATCTGTACAGCA
LOC_Os07g25410
Os.20070.1.S1_x_at--994--4791Chr07:14518612..14518636 (25 bp)
GCTCTAGAATAGTACTTCCCGTTCA
NONE
Target Sequence 
GAATGGATACCACGGTGACACCTCAAGGACATACCTATGTGGAGAAGTTGATGAATCTACTATGCAACTTGTAAAGCCTG
CAAACACGGTGCTAGTTTTAAGACAATTGGTCAGAGAATAAGTGAGTACGTGGACGAGTACGGGTACAGCATCGATCCCT
TTGTCGGACATTCACAATTGGTAGAGCCTACTCTGTCCATGGGAGGCACCCAGTGCACACTGTGGGACGACGGGTGGACG
GCTGTCACGGTGGACAGCAGCCTCACCGCGCAGTTCGAGCACACCATCTTGGTCACCGGCGACGGCGCGGAGATCCTCAC
CATGCACCCGCGGTGAGATGACGAGAAATTCTACGCAACTAGCACCACTTGCATATCGTGCTGGTCTAAAAGCATCCTTT
TCTCAGTTTTCATCTTTCACAAAACAAAGGCAACTCATGATCTGTACAGCATTTTCAAATAGTAGCAAAATGCCCATACT
TTGTTACGGGATTAAAAACAAAATCTTACTGTATGCTCTAGAATAGTACTTCCCGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20070.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis