Browse Element(s) Details


OsAffx.28576.4.S1_at

Description tigr:9635.m02431
TID=OsAffx.28576.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2537011/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25340OsAffx.22385.1.S1_x_at4/117+14473512..14478899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g25340OsAffx.20329.1.S1_at1/117+14473512..14478899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g25349NANA7+14479093..14480173NA
LOC_Os07g25360Os.49815.1.S1_at11/117+14493563..14497509retrotransposon protein, putative, unclassified, expressed
LOC_Os07g25360Os.53842.1.S1_x_at1/117+14493563..14497509retrotransposon protein, putative, unclassified, expressed
LOC_Os07g25370OsAffx.28576.4.S1_at11/117+14500360..14500938Myb-like DNA-binding domain containing protein
LOC_Os07g25380OsAffx.28577.1.S1_at11/117+14501285..14501695hypothetical protein
LOC_Os07g25390OsAffx.12926.1.S1_at2/117+14504238..14510791SNF2 domain-containing protein, putative, expressed
LOC_Os07g25390Os.15946.1.S1_at1/117+14504238..14510791SNF2 domain-containing protein, putative, expressed
LOC_Os07g25400OsAffx.16403.1.S1_at11/117+14515170..14515409hypothetical protein
LOC_Os07g25410Os.20070.1.S1_x_at10/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25410Os.52673.1.S1_at4/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25410OsAffx.3017.1.S1_x_at1/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25420Os.12424.1.S1_at11/117+14525756..1452882826S proteasome non-ATPase regulatory subunit Nin1/mts3 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28576.4.S1_at--799--4712Chr07:14500787..14500811 (25 bp)
GCTGGAGCCGGGTCGCTAGGAGCAT
LOC_Os07g25370
OsAffx.28576.4.S1_at--1015--8411Chr07:14500605..14500629 (25 bp)
GGCCGGACCTCGCGCATCATGAAGC
LOC_Os07g25370
OsAffx.28576.4.S1_at--800--9991Chr07:14500544..14500568 (25 bp)
TAGCTGCCACCGCCAGGAAGGTGCA
LOC_Os07g25370
OsAffx.28576.4.S1_at--272--7331Chr07:14500524..14500548 (25 bp)
GTGCAGGCGCTCGACATGGTGGAAA
LOC_Os07g25370
OsAffx.28576.4.S1_at--538--4531Chr07:14500468..14500492 (25 bp)
GCCGCCAGAGTTGCAGCGTTCTTTG
LOC_Os07g25370
OsAffx.28576.4.S1_at--1069--1331Chr07:14500462..14500486 (25 bp)
AGAGTTGCAGCGTTCTTTGGCGGAC
LOC_Os07g25370
OsAffx.28576.4.S1_at--372--5071Chr07:14500456..14500480 (25 bp)
GCAGCGTTCTTTGGCGGACGCTCTT
LOC_Os07g25370
OsAffx.28576.4.S1_at--688--10872Chr07:14500446..14500470 (25 bp)
TTGGCGGACGCTCTTGCCTCGAGCT
LOC_Os07g25370
OsAffx.28576.4.S1_at--295--4911Chr07:14500424..14500448 (25 bp)
GCTTCGGTTATTGTAGCCTTGCCAA
LOC_Os07g25370
OsAffx.28576.4.S1_at--126--1691Chr07:14500410..14500434 (25 bp)
AGCCTTGCCAACGAGCACGCGATGG
LOC_Os07g25370
OsAffx.28576.4.S1_at--626--2591Chr07:14500401..14500425 (25 bp)
AACGAGCACGCGATGGATCCCCTGG
LOC_Os07g25370
Target Sequence 
GCTGGAGCCGGGTCGCTAGGAGCATGCCACGCCGCTCCGCCAGGTCGTGCCGCGACAGGTGGCGCCACCACCTCGCCCGC
GACGTCTACCACCGCCCCTTCACCGCCCGTGACGACGACGAGCTCCTTCGCCTCCACTACCGCCTCGGCGACCGCTGGAA
GGAGATCGGCCGCGCCGTCTACGGCCGGACCTCGCGCATCATGAAGCACCGCTGGAGGGAGCTCCGGCGCAGCGGCTTCC
CGCTAGCTGCCACCGCCAGGAAGGTGCAGGCGCTCGACATGGTGGAAAGCGAAGTGGAGGAGTCAGACCAGTCGCTGCCG
CCGCCAGAGTTGCAGCGTTCTTTGGCGGACGCTCTTGCCTCGAGCTTCGGTTATTGTAGCCTTGCCAACGAGCACGCGAT
GGATCCCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28576.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis