Browse Element(s) Details


Os.15946.1.S1_at

Description gb:AK072159.1
DB_XREF= gi:32982182
TID=Os.15946.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132J03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132J03, full insert sequence.
FL= gb:AK072159.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1444011/11SNF2 domain-containing protein, putative, expressed
LOC_Os08g192501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g253901/11SNF2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14430Os.40360.1.S1_x_at1/116+8073981..8075942hypothetical protein
LOC_Os06g14440Os.15946.1.S1_at11/116+8096303..8103473SNF2 domain-containing protein, putative, expressed
LOC_Os06g14440OsAffx.17069.1.S1_at3/116+8096303..8103473SNF2 domain-containing protein, putative, expressed
LOC_Os06g14450Os.53612.1.S1_at11/116+8115250..8118846Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g14460Os.24295.1.A1_at10/116+8126438..8128338chromosome condensation family protein, putative, expressed
LOC_Os06g14470Os.10007.2.S1_a_at11/116+8128424..8133454DIP2 protein, putative, expressed
LOC_Os06g14470Os.10007.1.A1_a_at11/116+8128424..8133454DIP2 protein, putative, expressed
LOC_Os06g14470Os.15454.1.S1_x_at1/116+8128424..8133454DIP2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15946.1.S1_at--905--7013Chr06:8102837..8102861 (25 bp)
GTACATAATGCAATGCTGATCTTTC
LOC_Os06g14440
Os.15946.1.S1_at--970--3471Chr06:8103324..8103348 (25 bp)
CAGGTTATCCATCGTGCATTTGTGC
LOC_Os06g14440
Os.15946.1.S1_at--893--4953Chr06:8103339..8103363 (25 bp)
GCATTTGTGCATCTCTTTTATCTCC
LOC_Os06g14440
Os.15946.1.S1_at--930--9552Chr06:8103352..8103376 (25 bp)
TCTTTTATCTCCTTTGTTGCTGTAC
LOC_Os06g14440
Os.15946.1.S1_at--599--9231Chr06:8103361..8103385 (25 bp)
TCCTTTGTTGCTGTACCTGGTTTTT
LOC_Os06g14440
Os.15946.1.S1_at--89--6992Chr06:8103373..8103397 (25 bp)
GTACCTGGTTTTTGTGTCGACCATT
LOC_Os06g14440
Os.15946.1.S1_at--772--8672Chr06:8103385..8103409 (25 bp)
TGTGTCGACCATTCTAGTTTCAATT
LOC_Os06g14440
Os.15946.1.S1_at--727--112Chr06:8103395..8103419 (25 bp)
ATTCTAGTTTCAATTCTGGCTCCCA
LOC_Os06g14440
Os.15946.1.S1_at--357--10612Chr06:8103408..8103432 (25 bp)
TTCTGGCTCCCATGAAAGATGCTTT
LOC_Os06g14440
Os.15946.1.S1_at--659--6332Chr06:8103425..8103449 (25 bp)
GATGCTTTAAGACTCGCAATGCCAG
LOC_Os06g14440
Os.15946.1.S1_at--491--5193Chr06:8103440..8103464 (25 bp)
GCAATGCCAGGATGCATACTTTTTT
LOC_Os06g14440
Target Sequence 
GTACATAATGCAATGCTGATCTTTCTGGNTGATCATNGCTGTGAAGNTGTNANCAGTAGCCCCTTCTANTGCCGGNGTTC
CNTTCATGCTAGGATTTNTCGTTAACCTCNGTCNTTTCCCTACCTNTTTNGAACCNCTGTCCGNTTTGTTAACATGTGCC
AGCTTGGNGCAGCGGTTNGCNNGCTGATCCTAGTCTNATTTTTCTTACTGAANATCTCCAGGANTAATAACTATGGTTTC
TGCCGTTCCNGCTTGCGGCAACAACTNAAATAATGCCACTGTTTCCTNACNTGTCTTTTGTGCACTNCAATTGNTCNTTC
NAATTTNCCCGTTNTNNTAGGGTAAAGATANTTTNTTTCTGNGCATAACGGNAATGCAGGTTATCCATCGTGCATTTGTG
CATCTCTTTTATCTCCTTTGTTGCTGTACCTGGTTTTTGTGTCGACCATTCTAGTTTCAATTCTGGCTCCCATGAAAGAT
GCTTTAAGACTCGCAATGCCAGGATGCATACTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis