Browse Element(s) Details


Os.10007.2.S1_a_at

Description gb:AK068366.1
DB_XREF= gi:32978384
TID=Os.10007.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150P17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145B19, full insert sequence.
FL= gb:AK068366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1447011/11DIP2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14440Os.15946.1.S1_at11/116+8096303..8103473SNF2 domain-containing protein, putative, expressed
LOC_Os06g14440OsAffx.17069.1.S1_at3/116+8096303..8103473SNF2 domain-containing protein, putative, expressed
LOC_Os06g14450Os.53612.1.S1_at11/116+8115250..8118846Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g14460Os.24295.1.A1_at10/116+8126438..8128338chromosome condensation family protein, putative, expressed
LOC_Os06g14470Os.10007.2.S1_a_at11/116+8128424..8133454DIP2 protein, putative, expressed
LOC_Os06g14470Os.10007.1.A1_a_at11/116+8128424..8133454DIP2 protein, putative, expressed
LOC_Os06g14470Os.15454.1.S1_x_at1/116+8128424..8133454DIP2 protein, putative, expressed
LOC_Os06g14480Os.47130.4.A1_x_at2/116+8139997..8140254retrotransposon protein, putative, unclassified
LOC_Os06g14490Os.54493.1.S1_at11/116+8141729..8146086calmodulin-binding heat-shock protein, putative, expressed
LOC_Os06g14490Os.57121.1.S1_at1/116+8141729..8146086calmodulin-binding heat-shock protein, putative, expressed
LOC_Os06g14500OsAffx.27635.1.S1_at10/116+8146960..8148150hypothetical protein
LOC_Os06g14500Os.6094.1.S1_at1/116+8146960..8148150hypothetical protein
LOC_Os06g14510Os.4697.1.S1_at11/116+8151445..8158386Glucose-6-phosphate isomerase, cytosolic B, putative, expressed
LOC_Os06g14510Os.57457.1.S1_x_at2/116+8151445..8158386Glucose-6-phosphate isomerase, cytosolic B, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10007.2.S1_a_at--306--1211Chr06:8131763..8131787 (25 bp)
AGTTTTGCTGATGCTAGTTGATTCA
LOC_Os06g14470
Os.10007.2.S1_a_at--172--1251Chr06:8131748..8131772 (25 bp)
AGTTGATTCATCAAGTACCATGGAT
LOC_Os06g14470
Os.10007.2.S1_a_at--922--6251Chr06:8131722..8131746 (25 bp)
GATGGGTTTTGTGGTTTGACGCTAA
LOC_Os06g14470
Os.10007.2.S1_a_at--504--1831Chr06:8131704..8131728 (25 bp)
ACGCTAACTATTTCTCATCATCATC
LOC_Os06g14470
Os.10007.2.S1_a_at--245--9611Chr06:8131690..8131714 (25 bp)
TCATCATCATCTGGGTATGTGTGCT
LOC_Os06g14470
Os.10007.2.S1_a_at--684--8511Chr06:8131664..8131688 (25 bp)
TGGAAAATCATCAGTCATTCAACAA
LOC_Os06g14470
Os.10007.2.S1_a_at--676--5111Chr06:8131485..8131509 (25 bp)
GCACTATGCATGCTGGAATCTGACA
LOC_Os06g14470
Os.10007.2.S1_a_at--865--5251Chr06:8131470..8131494 (25 bp)
GAATCTGACAGTTCCACACACATTG
LOC_Os06g14470
Os.10007.2.S1_a_at--629--7611Chr06:8131446..8131470 (25 bp)
GGGAATTTTCAAGCTCATGTTCTCT
LOC_Os06g14470
Os.10007.2.S1_a_at--670--2691Chr06:8131436..8131460 (25 bp)
AAGCTCATGTTCTCTGTTCACAACT
LOC_Os06g14470
Os.10007.2.S1_a_at--669--9471Chr06:8131424..8131448 (25 bp)
TCTGTTCACAACTCTGCTTCAGGAA
LOC_Os06g14470
Target Sequence 
AGTTTTGCTGATGCTAGTTGATTCATCAAGTACCATGGATTGATGGGTTTTGTGGTTTGACGCTAACTATTTCTCATCAT
CATCTGGGTATGTGTGCTNTGGAAAATCATCAGTCATTCAACAAAACCAAGGATATTGTATGGAGGCAAGATCTGTTTGA
GGACAGCATGGTTGCTGCTGGCCTTTCTGTGACAGAATCTAGTACAAAGCTGTATATTTCAAACTTGCACTATGGAGTGA
CAAAAGAAGATATACAGGTAGCTGGATCTNTGCGTTTTGCACTATGCATGCTGGAATCTGACAGTTCCACACACATTGGG
AATTTTCAAGCTCATGTTCTCTGTTCACAACTCTGCTTCAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10007.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis