Browse Element(s) Details


Os.10007.1.A1_a_at

Description gb:AK072983.1
DB_XREF= gi:32983006
TID=Os.10007.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150P17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150P17, full insert sequence.
FL= gb:AK072983.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1447011/11DIP2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14440Os.15946.1.S1_at11/116+8096303..8103473SNF2 domain-containing protein, putative, expressed
LOC_Os06g14440OsAffx.17069.1.S1_at3/116+8096303..8103473SNF2 domain-containing protein, putative, expressed
LOC_Os06g14450Os.53612.1.S1_at11/116+8115250..8118846Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g14460Os.24295.1.A1_at10/116+8126438..8128338chromosome condensation family protein, putative, expressed
LOC_Os06g14470Os.10007.2.S1_a_at11/116+8128424..8133454DIP2 protein, putative, expressed
LOC_Os06g14470Os.10007.1.A1_a_at11/116+8128424..8133454DIP2 protein, putative, expressed
LOC_Os06g14470Os.15454.1.S1_x_at1/116+8128424..8133454DIP2 protein, putative, expressed
LOC_Os06g14480Os.47130.4.A1_x_at2/116+8139997..8140254retrotransposon protein, putative, unclassified
LOC_Os06g14490Os.54493.1.S1_at11/116+8141729..8146086calmodulin-binding heat-shock protein, putative, expressed
LOC_Os06g14490Os.57121.1.S1_at1/116+8141729..8146086calmodulin-binding heat-shock protein, putative, expressed
LOC_Os06g14500OsAffx.27635.1.S1_at10/116+8146960..8148150hypothetical protein
LOC_Os06g14500Os.6094.1.S1_at1/116+8146960..8148150hypothetical protein
LOC_Os06g14510Os.4697.1.S1_at11/116+8151445..8158386Glucose-6-phosphate isomerase, cytosolic B, putative, expressed
LOC_Os06g14510Os.57457.1.S1_x_at2/116+8151445..8158386Glucose-6-phosphate isomerase, cytosolic B, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10007.1.A1_a_at--223--1271Chr06:8129895..8129919 (25 bp)
AGATTTGGGTATGGCTGCTCCTTCA
LOC_Os06g14470
Os.10007.1.A1_a_at--535--10531Chr06:8129874..8129898 (25 bp)
TTCAGCACCCCGTGTTAGTGTTGTC
LOC_Os06g14470
Os.10007.1.A1_a_at--429--7411Chr06:8129863..8129887 (25 bp)
GTGTTAGTGTTGTCCCTGGTGCAAG
LOC_Os06g14470
Os.10007.1.A1_a_at--315--9251Chr06:8128948..8129423 (25 bp)
TCCTGGGTGGAAGCGTAACAATTTT
LOC_Os06g14470
Os.10007.1.A1_a_at--1050--8411Chr06:8128894..8128918 (25 bp)
TGGCCGTGGACGTAATAACTTTGGG
LOC_Os06g14470
Os.10007.1.A1_a_at--472--971Chr06:8128805..8128829 (25 bp)
AGGAGCTGGATAGCTATCATTCCGG
LOC_Os06g14470
Os.10007.1.A1_a_at--75--5711Chr06:8128767..8128791 (25 bp)
GACTAAGATGTCACCTGGATCTCGG
LOC_Os06g14470
Os.10007.1.A1_a_at--225--6911Chr06:8128710..8128734 (25 bp)
GTATCTGTTTACATTTACCGCTGAG
LOC_Os06g14470
Os.10007.1.A1_a_at--567--5131Chr06:8128628..8128652 (25 bp)
GCAAATTCTTGTTCTAGGCTAGTCA
LOC_Os06g14470
Os.10007.1.A1_a_at--1030--911Chr06:8128613..8128637 (25 bp)
AGGCTAGTCACTACTCCATTATATT
LOC_Os06g14470
Os.10007.1.A1_a_at--447--351Chr06:8128585..8128609 (25 bp)
ATAACTGGATTGTAACTGCTTGGCC
LOC_Os06g14470
Target Sequence 
AGATTTGGGTATGGCTGCTCCTTCAGCACCCCGTGTTAGTGTTGTCCCTGGTGCAAGGGGTAGAGGACAGCGAGAAGTTG
TAATGATGCCTGGTGGGAGTGGGTTTGGTCGAGGTGCAGCTGGTTCATCTAATTTCATTCCTGGGTGGAAGCGTAACAAT
TTTGCACAAAGAGGTGGGCAAGGCCGAGGTCGTGGCCGTGGACGTAATAACTTTGGGCGTGGGCGTGGGCGTGGCTATGT
TCGGAAGGGACCTGTGGAGAAATCAGCTGAGCAATTGGACAAGGAGCTGGATAGCTATCATTCCGGGGCAATGAATGTCG
ACTAAGATGTCACCTGGATCTCGGTGGAGGCGTGAAATTTGCAGTTTGTTATATAAGTATCTGTTTACATTTACCGCTGA
GTTATAATAGCTGGTGTTATGTCAGTTATTATTCAAGCTTTAATATTAGGTTTCAACTGCAAATTCTTGTTCTAGGCTAG
TCACTACTCCATTATATTATTATAACTGGATTGTAACTGCTTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10007.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis