Browse Element(s) Details

OsAffx.27635.1.S1_at

Description

tigr:9634.m01448
TID=OsAffx.27635.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g14500	10/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g14460	Os.24295.1.A1_at	10/11	6	+	8126438..8128338	chromosome condensation family protein, putative, expressed
LOC_Os06g14470	Os.10007.2.S1_a_at	11/11	6	+	8128424..8133454	DIP2 protein, putative, expressed
LOC_Os06g14470	Os.10007.1.A1_a_at	11/11	6	+	8128424..8133454	DIP2 protein, putative, expressed
LOC_Os06g14470	Os.15454.1.S1_x_at	1/11	6	+	8128424..8133454	DIP2 protein, putative, expressed
LOC_Os06g14480	Os.47130.4.A1_x_at	2/11	6	+	8139997..8140254	retrotransposon protein, putative, unclassified
LOC_Os06g14490	Os.54493.1.S1_at	11/11	6	+	8141729..8146086	calmodulin-binding heat-shock protein, putative, expressed
LOC_Os06g14490	Os.57121.1.S1_at	1/11	6	+	8141729..8146086	calmodulin-binding heat-shock protein, putative, expressed
LOC_Os06g14500	OsAffx.27635.1.S1_at	10/11	6	+	8146960..8148150	hypothetical protein
LOC_Os06g14500	Os.6094.1.S1_at	1/11	6	+	8146960..8148150	hypothetical protein
LOC_Os06g14510	Os.4697.1.S1_at	11/11	6	+	8151445..8158386	Glucose-6-phosphate isomerase, cytosolic B, putative, expressed
LOC_Os06g14510	Os.57457.1.S1_x_at	2/11	6	+	8151445..8158386	Glucose-6-phosphate isomerase, cytosolic B, putative, expressed
LOC_Os06g14520	NA	NA	6	+	8162528..8162758	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27635.1.S1_at--1094--947	1	Chr06:8148026..8148050 (25 bp)	TCTGCGCGACTCCAGCGATGGCGTC	LOC_Os06g14500
OsAffx.27635.1.S1_at--381--87	1	Chr06:8148009..8148033 (25 bp)	ATGGCGTCGCCAGATCCAGTTGCCC	LOC_Os06g14500
OsAffx.27635.1.S1_at--472--129	1	Chr06:8147998..8148022 (25 bp)	AGATCCAGTTGCCCCGCCAGATCTG	LOC_Os06g14500
OsAffx.27635.1.S1_at--1133--453	2	Chr07:16321911..16321935 (25 bp)	GCGCCCTCGGGCGTTGGCAGGTGGC	NONE
OsAffx.27635.1.S1_at--588--105	1	Chr06:8147888..8147912 (25 bp)	AGGTGGCCTGTAGCTCCGGCGCGTT	LOC_Os06g14500
OsAffx.27635.1.S1_at--966--489	1	Chr06:8147848..8147872 (25 bp)	GCTTCGGGTCGGCAGCGGCTCGCGT	LOC_Os06g14500
OsAffx.27635.1.S1_at--390--163	1	NONE	AGCGGCTCGCGTGGCTTCGCTCAGA	NONE
OsAffx.27635.1.S1_at--285--947	1	Chr06:8147073..8147097 (25 bp)	TCTGGAGACCTCGTTTGCTTTATGT	LOC_Os06g14500
OsAffx.27635.1.S1_at--1064--599	1	Chr06:8147069..8147093 (25 bp)	GAGACCTCGTTTGCTTTATGTTGTC	LOC_Os06g14500
OsAffx.27635.1.S1_at--603--175	1	Chr06:8147066..8147090 (25 bp)	ACCTCGTTTGCTTTATGTTGTCGAA	LOC_Os06g14500
OsAffx.27635.1.S1_at--319--489	5	Chr07:22914570..22914591 (22 bp)	GCTTTATGTTGTCGAAGCTGCTTGC	NONE

Target Sequence

TCTGCGCGACTCCAGCGATGGCGTCGCCAGATCCAGTTGCCCCGCCAGATCTGGCCGAGGTGACGACGGCGGCGCGGCGG
TGGGGCTCTACGCGGCCGGCGACGGGCTCGGTCGGCGCCGGCGCCCTCGGGCGTTGGCAGGTGGCCTGTAGCTCCGGCGC
GTTTCGTCGGCGACGACGGCTTCGGGTCGGCAGCGGCTCGCGTGGCTTCGCTCAGAAGGTTTATGCTCCACTAGAGGATG
TTCGGTGGTTCTGGAGACCTCGTTTGCTTTATGTTGTCGAAGCTGCTTGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis