Browse Element(s) Details

Os.24295.1.A1_at

Description

gb:AK119768.1
DB_XREF= gi:37989391
TID=Os.24295.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-E11, full insert sequence.
FL= gb:AK119768.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g14460	10/11	chromosome condensation family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g14440	Os.15946.1.S1_at	11/11	6	+	8096303..8103473	SNF2 domain-containing protein, putative, expressed
LOC_Os06g14440	OsAffx.17069.1.S1_at	3/11	6	+	8096303..8103473	SNF2 domain-containing protein, putative, expressed
LOC_Os06g14450	Os.53612.1.S1_at	11/11	6	+	8115250..8118846	Exo70 exocyst complex subunit family protein, expressed
LOC_Os06g14460	Os.24295.1.A1_at	10/11	6	+	8126438..8128338	chromosome condensation family protein, putative, expressed
LOC_Os06g14470	Os.10007.2.S1_a_at	11/11	6	+	8128424..8133454	DIP2 protein, putative, expressed
LOC_Os06g14470	Os.10007.1.A1_a_at	11/11	6	+	8128424..8133454	DIP2 protein, putative, expressed
LOC_Os06g14470	Os.15454.1.S1_x_at	1/11	6	+	8128424..8133454	DIP2 protein, putative, expressed
LOC_Os06g14480	Os.47130.4.A1_x_at	2/11	6	+	8139997..8140254	retrotransposon protein, putative, unclassified
LOC_Os06g14490	Os.54493.1.S1_at	11/11	6	+	8141729..8146086	calmodulin-binding heat-shock protein, putative, expressed
LOC_Os06g14490	Os.57121.1.S1_at	1/11	6	+	8141729..8146086	calmodulin-binding heat-shock protein, putative, expressed
LOC_Os06g14500	OsAffx.27635.1.S1_at	10/11	6	+	8146960..8148150	hypothetical protein
LOC_Os06g14500	Os.6094.1.S1_at	1/11	6	+	8146960..8148150	hypothetical protein
LOC_Os06g14510	Os.4697.1.S1_at	11/11	6	+	8151445..8158386	Glucose-6-phosphate isomerase, cytosolic B, putative, expressed
LOC_Os06g14510	Os.57457.1.S1_x_at	2/11	6	+	8151445..8158386	Glucose-6-phosphate isomerase, cytosolic B, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0007076	biological_process	mitotic chromosome condensation

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.24295.1.A1_at--244--635	1	Chr06:8127781..8127805 (25 bp)	GATGCTGGCTTCAGGTTGGAGACCA	LOC_Os06g14460
Os.24295.1.A1_at--5--601	1	Chr06:8127799..8127823 (25 bp)	GAGACCAATTCTGTGGTGCCACCAA	LOC_Os06g14460
Os.24295.1.A1_at--90--57	1	Chr06:8127882..8127906 (25 bp)	ATCCTCCAGCGATGACAGTGACATA	LOC_Os06g14460
Os.24295.1.A1_at--974--95	1	Chr06:8127917..8127941 (25 bp)	AGGATAACTTGCACGCGACGTCGGT	LOC_Os06g14460
Os.24295.1.A1_at--1129--65	1	Chr06:8128058..8128082 (25 bp)	ATGAATCGGACGACCAGTCCGGCGT	LOC_Os06g14460
Os.24295.1.A1_at--276--895	1	Chr06:8128082..8128106 (25 bp)	TGACATCCGGTGATGATTCCTCCGA	LOC_Os06g14460
Os.24295.1.A1_at--714--1	1	Chr06:8128097..8128121 (25 bp)	ATTCCTCCGACGAGGATTCGTCTTA	LOC_Os06g14460
Os.24295.1.A1_at--564--913	1	Chr06:8128147..8128171 (25 bp)	TGCTGGCGTTCTTGGCCGAGAGAAC	LOC_Os06g14460
Os.24295.1.A1_at--711--135	1	Chr06:8128165..8128189 (25 bp)	AGAGAACCCGGCAATATAGCTATTT	LOC_Os06g14460
Os.24295.1.A1_at--967--983	1	Chr06:8128189..8128213 (25 bp)	TAAATTATGGTGATGGCTTCGACAT	LOC_Os06g14460
Os.24295.1.A1_at--376--671	1	NONE	GTTCGTATATGGGAAGCTTTCGCTT	NONE

Target Sequence

GATGCTGGCTTCAGGTTGGAGACCAATTCTGTGGTGCCACCAACGCCAGCACCACGGTCAGTCCGGCCTCCTCCCAGCAG
GAGAAGGGCGAGACGGTCGCCATCCTCCAGCGATGACAGTGACATAGATGGCCAGGAGGATAACTTGCACGCGACGTCGG
TGANCCGTGTTGCGGCCACTCCGGTGGTGNATGACCGCGGCTCGTTCGCAGNGAGCAAGCAAGACGGCGGCGATGAGCAA
GATGTCTGCGAAGCNCCACCGTGGCTGCTTCTTCTGACGATGAATCGGACGACCAGTCCGGCGTGACATCCGGTGATGAT
TCCTCCGACGAGGATTCGTCTTAAACCTTAGTTTATCTCTTTAGATGATGCTGGCGTTCTTGGCCGAGAGAACCCGGCAA
TATAGCTATTTAAATTATGGTGATGGCTTCGACATGTCGCTACCNACTCGTCTCTGTATGTTTTGTATCGTGTATGACNA
ACTGTATCCNAATTCGAGTACATGCAGTANGATTATGCTACAAAAATGTTTATCTGATTTAGGATGATGTTTTGTGTACC
NAACGTGCTGTTCGTATATGGGAAGCTTTCGCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis