Browse Element(s) Details


Os.12424.1.S1_at

Description gb:AB037153.1
DB_XREF= gi:17297984
GEN=OsRPN12
TID=Os.12424.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12424 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRPN12 mRNA for 26S proteasome regulatory particle non-ATPase subunit12, complete cds.
PROD=26S proteasome regulatory particle non-ATPasesubunit12
FL= gb:AK101316.1 gb:AK061383.1 gb:AB037153.1 gb:AK061408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2542011/1126S proteasome non-ATPase regulatory subunit Nin1/mts3 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25370OsAffx.28576.4.S1_at11/117+14500360..14500938Myb-like DNA-binding domain containing protein
LOC_Os07g25380OsAffx.28577.1.S1_at11/117+14501285..14501695hypothetical protein
LOC_Os07g25390OsAffx.12926.1.S1_at2/117+14504238..14510791SNF2 domain-containing protein, putative, expressed
LOC_Os07g25390Os.15946.1.S1_at1/117+14504238..14510791SNF2 domain-containing protein, putative, expressed
LOC_Os07g25400OsAffx.16403.1.S1_at11/117+14515170..14515409hypothetical protein
LOC_Os07g25410Os.20070.1.S1_x_at10/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25410Os.52673.1.S1_at4/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25410OsAffx.3017.1.S1_x_at1/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25420Os.12424.1.S1_at11/117+14525756..1452882826S proteasome non-ATPase regulatory subunit Nin1/mts3 family protein, expressed
LOC_Os07g25430Os.46422.1.S1_at11/117+14531621..14532691Photosystem I reaction centre subunit IV/PsaE family protein, expressed
LOC_Os07g25440Os.23952.1.S1_at11/117+14532905..14540052Ribosome biogenesis protein BOP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0005838cellular_componentproteasome regulatory particle (sensu Eukaryota)
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12424.1.S1_at--902--10571Chr07:14526669..14526693 (25 bp)
TTCTGCCGGTCACAGCACTTGAAAA
LOC_Os07g25420
Os.12424.1.S1_at--672--4731Chr07:14526565..14526589 (25 bp)
GCTGTGCCCCACGAAACATATGTGT
LOC_Os07g25420
Os.12424.1.S1_at--93--7451Chr07:14526544..14526568 (25 bp)
GTGTACTTCATGGATCTTCTTGCCA
LOC_Os07g25420
Os.12424.1.S1_at--74--7031Chr07:14526220..14526326 (25 bp)
GTACATCGCAGAGGAGCACCCTGAA
LOC_Os07g25420
Os.12424.1.S1_at--21--8051Chr07:14526154..14526178 (25 bp)
GGAGACCCAGCCCTGCAAGGAGATA
LOC_Os07g25420
Os.12424.1.S1_at--251--8051Chr07:14526136..14526160 (25 bp)
GGAGATACCATCTTTGCAGGTTATC
LOC_Os07g25420
Os.12424.1.S1_at--1069--7871Chr07:14526118..14526142 (25 bp)
GGTTATCAACCAAACGCTCAGCTAT
LOC_Os07g25420
Os.12424.1.S1_at--756--1271Chr07:14526045..14526069 (25 bp)
AGATCATTTGGGACGGCATGTTCAT
LOC_Os07g25420
Os.12424.1.S1_at--768--6031Chr07:14525993..14526017 (25 bp)
GAGATGCGCATGTTGCAGCTTTGAA
LOC_Os07g25420
Os.12424.1.S1_at--150--4891Chr07:14525976..14526000 (25 bp)
GCTTTGAACGTTTGAGATGCCCATG
LOC_Os07g25420
Os.12424.1.S1_at--556--6031Chr07:14525963..14525987 (25 bp)
GAGATGCCCATGTTACCTTATGATA
LOC_Os07g25420
Target Sequence 
TTCTGCCGGTCACAGCACTTGAAAATCCTTGCATCAAGCATGCGGTGGAGCTTGAGCAGTCATTTATGGAGGGTGCTTAC
AACCGAGTGTTGAGCGCTCGCCAGGCTGTGCCCCACGAAACATATGTGTACTTCATGGATCTTCTTGCCAAAACAGTCAG
AGATGAACTGGCTGGTTGCAGTGAGAAGGGTTATGATTATATGTCAATAGCTGAAGCAAGACAAGTGCTGATGTTCAGCT
CTGACAAAGAATTGCACCAGTACATCGCAGAGGAGCACCCTGAATGGGAGGTAAAGGATGGTTCCGTCTTCTTCCAGAAG
GCGAAGGAGACCCAGCCCTGCAAGGAGATACCATCTTTGCAGGTTATCAACCAAACGCTCAGCTATGCTAGAGAGCTGGA
GCGGATTGTATGATTTGTTAATGAATATCATTTGAGATCATTTGGGACGGCATGTTCATGCTATGTACACATCAGGTGTC
ACGGTTGAGATGCGCATGTTGCAGCTTTGAACGTTTGAGATGCCCATGTTACCTTATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis